PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::5yzgY to PF04502 (Saf4_Yju2)

biolip::5yzgY has 204 amino acids

Query:       Saf4_Yju2  [M=333]
Accession:   PF04502.17
Description: Saf4/Yju2 protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-106  343.1  17.2   1.4e-106  343.0  17.2    1.0  1  biolip::5yzgY  


Domain annotation for each sequence (and alignments):
>> biolip::5yzgY  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.0  17.2  1.4e-106  1.4e-106       1     192 [.       8     198 ..       8     204 .] 0.97

  Alignments for each domain:
  == domain 1  score: 343.0 bits;  conditional E-value: 1.4e-106
      Saf4_Yju2   1 kYyPPDfDpskiprerarknrqlvvRlmaPfnirCktCgeyIykGkkFNarkekVenetYlgipIfrFyiKCtrClaeiefkTDPkntdYvieeGa 96 
                    kYyPPDfDpskip+ +++k+rq+vvRlmaPfn+rCktCgeyIykGkkFNarke+V+ne Ylg+pIfrFyiKCtrClaei+fkTDP+ntdY++e+Ga
  biolip::5yzgY   8 KYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGA 103
                    9*********************************************************************************************** PP

      Saf4_Yju2  97 tRnfeaekleeeeakreekereeeeaedamkklEkrtkdskkemealesLeeLkelnqrqakvdyeamlelrrefreekkereeeeedeealkekl 192
                    tRnf+aekl eee+kr +kere+ee +++mk+lE+rtkdsk eme+le+L+eLk+lnqrqa+vd+eaml+++r ++ee++++++ee de+++ + l
  biolip::5yzgY 104 TRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEEERRRQQQEE-DEQETAALL 198
                    *************************************************************************9999999999988.999988555 PP



Or compare biolip::5yzgY to CDD or PaperBLAST