PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::7b9vD to PF04502 (Saf4_Yju2)

biolip::7b9vD has 194 amino acids

Query:       Saf4_Yju2  [M=333]
Accession:   PF04502.17
Description: Saf4/Yju2 protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-51  159.6   5.6    9.5e-51  159.4   5.6    1.0  1  biolip::7b9vD  


Domain annotation for each sequence (and alignments):
>> biolip::7b9vD  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   5.6   9.5e-51   9.5e-51       1     157 [.       8     168 ..       8     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 9.5e-51
      Saf4_Yju2   1 kYyPPDfDpski........prerarknrqlvvRlmaPfnirCktCgeyIykGkkFNarkekVenetYl.gipIfrFyiKCtrClaeiefkTDPkn 87 
                    kYyPPD++p           ++ +  ++    +Rlm+Pf++rC +C+eyI k +kFN +ke + +e+Yl +i+I+r  i C+rC + i f+TDP n
  biolip::7b9vD   8 KYYPPDYNPLEAeklsrkmaKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKSRKFNGKKE-LLKEKYLdSIKIYRLTISCPRCANSIAFRTDPGN 102
                    9********8886555542223333367999******************************.55569*978************************* PP

      Saf4_Yju2  88 tdYvieeGatRnfeaekleeeeakreekereeeeaedamkklEkrtkdskkemealesLeeLkelnqrqa 157
                    +dYv+e G+ Rn+       e  +r  +e+e e++ed+m  lEkr ++ ++e+e  e+Le+L++ n +  
  biolip::7b9vD 103 SDYVMEVGGVRNYSID----ETLQRLVREKEMEQNEDKMDLLEKRLAKIQQEQEDDEELENLRKKNLEMS 168
                    ***********99654....5555667888888899**************************96543332 PP



Or compare biolip::7b9vD to CDD or PaperBLAST