PaperBLAST – Find papers about a protein or its homologs

 

Align XP_003534866.1 to PF04526 (DUF568)

XP_003534866.1 has 404 amino acids

Query:       DUF568  [M=100]
Accession:   PF04526.17
Description: Protein of unknown function (DUF568)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-27   80.4   0.6    1.5e-26   79.4   0.6    1.5  1  XP_003534866.1  


Domain annotation for each sequence (and alignments):
>> XP_003534866.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.6   1.5e-26   1.5e-26       1     100 []      95     193 ..      95     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.5e-26
          DUF568   1 MvGaqaLvAfkksngslvvktynltsyt.klsesklsfdvsdlsaeysggevtifAtlklpksnstkvnhVWqvGssvsgkspakHatsganlkS 94 
                     M+GaqaLvA+ +s+g+++  t ++ +   +l+e ++s++ s l+a+++++evti+Atl+lp s +t++ h+W++G+ vs ++pa+H+++++n++S
  XP_003534866.1  95 MTGAQALVAIIPSSGAPNAYTSSIANPGtTLAEGAISYNHSGLTATHQSTEVTIYATLTLP-SGTTTLVHLWNDGP-VSSGTPAMHSMTSSNTQS 187
                     9*********88*****99999977666256666***************************.668***********.77666************* PP

          DUF568  95 kgtldl 100
                     k++ldl
  XP_003534866.1 188 KESLDL 193
                     ****97 PP



Or compare XP_003534866.1 to CDD or PaperBLAST