PaperBLAST – Find papers about a protein or its homologs

 

Align C5Y9U6 to PF04535 (CASP_dom)

C5Y9U6 has 192 amino acids

Query:       CASP_dom  [M=151]
Accession:   PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-54  167.9  11.3    8.6e-54  167.6  11.3    1.1  1  C5Y9U6    


Domain annotation for each sequence (and alignments):
>> C5Y9U6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6  11.3   8.6e-54   8.6e-54       2     151 .]      28     176 ..      27     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 8.6e-54
  CASP_dom   2 rklrlaelvLRllalvlalaaavvmatnkqtkevf..kiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfilDqvlayl 100
               r++++a+++LR+l +v+++a+a+ m+t+++t+++f  +iq++ak+sdlp+f+++v+ana+++ Y +l+++ls+v+++r   +r+++++l+l+++D v+++l
    C5Y9U6  28 RAVSIADVFLRFLSIVATIASAISMGTTNETLPFFtqFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHIIR---PRARYSRLILVFFDAVMLAL 125
               6899*************************************************************************9...9******************* PP

  CASP_dom 101 llsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
               l+++asAaaa+vyla+kgn +a+W +iC+qf++Fc+r++++++ sf+a++l
    C5Y9U6 126 LTAGASAAAAIVYLAHKGNVRANWFAICQQFDSFCERISGSLIGSFAAMVL 176
               ************************************************986 PP



Or compare C5Y9U6 to CDD or PaperBLAST