SwissProt::Q3EB59 has 212 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-42 130.1 7.6 3.8e-42 129.8 7.6 1.1 1 SwissProt::Q3EB59
Domain annotation for each sequence (and alignments):
>> SwissProt::Q3EB59
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.8 7.6 3.8e-42 3.8e-42 3 151 .] 43 196 .. 41 196 .. 0.96
Alignments for each domain:
== domain 1 score: 129.8 bits; conditional E-value: 3.8e-42
CASP_dom 3 klrlaelvLRllalvlalaaavvmatnkqtkevf....kiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkk.serskalall 89
+ ++a++vLR+++++++ +a+++m+t+++t +++ ++q++a +s +++++ylvv+++++++Ysl+ql++s +l+rk+ ++++a++
SwissProt::Q3EB59 43 RNDVAMFVLRAMCMAVSTVAVTLMVTARETSMTTlygfEFQLHAVWSLSDSLIYLVVVSSATVLYSLIQLIISGTRLMRKSpVIPTRTQAWF 134
67899*************************99999**********************************************9555566**** PP
CASP_dom 90 lfilDqvlaylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
+f++Dq++ y ++s+ sAa++v+++ ++g +++ ++++C++ g Fc++ a++++++++afll
SwissProt::Q3EB59 135 CFVADQIIGYAMVSGGSAALGVTNMNRTGIRHMPLPNFCKSLGFFCDHLAGSIVFALFAFLL 196
************************************************************86 PP
Or compare SwissProt::Q3EB59 to CDD or PaperBLAST