VIMSS10102325 has 175 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.6e-41 125.4 6.2 1.1e-40 125.1 6.2 1.1 1 VIMSS10102325
Domain annotation for each sequence (and alignments):
>> VIMSS10102325
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.1 6.2 1.1e-40 1.1e-40 3 150 .. 3 146 .. 1 147 [. 0.96
Alignments for each domain:
== domain 1 score: 125.1 bits; conditional E-value: 1.1e-40
CASP_dom 3 klrlaelvLRllalvlalaaavvmatnkqtkevfkiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfilDqvla 98
klr +e++LRl+ +++ l++ +++++++qtke+++i+k+++f++l a+ +++ +++a+Y+l+ql l ++++ +++++ ++ ++lDq a
VIMSS10102325 3 KLRETEVILRLCIVFFLLLTSCLIGLDSQTKEIAYIHKNVSFRYLLALEAELYIDVVVAAYNLVQLGLGWYNVE----QKTSNPKWFSYLLDQTAA 94
57889******************************************************************996....5677899*********** PP
CASP_dom 99 ylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafl 150
y++++++sAaa+++ l+ +g +e+qW+k+C +f++Fc ++ +a++l+++a++
VIMSS10102325 95 YVVFAGTSAAAQHSLLVVTGSRELQWMKWCYKFTRFCFQMGSAIILNYIAAA 146
*************************************************987 PP
Or compare VIMSS10102325 to CDD or PaperBLAST