PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS9956214 to PF04535 (CASP_dom)

VIMSS9956214 has 162 amino acids

Query:       CASP_dom  [M=151]
Accession:   PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-39  121.4  12.1    1.9e-39  121.0  12.1    1.2  1  VIMSS9956214  


Domain annotation for each sequence (and alignments):
>> VIMSS9956214  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0  12.1   1.9e-39   1.9e-39       4     150 ..       5     141 ..       2     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 1.9e-39
      CASP_dom   4 lrlaelvLRllalvlalaaavvmatnkqtkevfkiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfilDqvlayl 100
                    rl++ vLRl+a+ +a+aaa++m+t+++t+++f i+++ak+s++p+f+++vva a+a++Ysll l++             ++   ll++ D+++ +l
  VIMSS9956214   5 HRLISAVLRLAAAGAAAAAAIIMVTSHETTSFFGIEMEAKYSYTPSFVFFVVAFAVAFAYSLLALLARPG----------STASRLLLLSDVMVGML 91 
                   6899*************************************************************99552..........236678999******** PP

      CASP_dom 101 llsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafl 150
                   l+ A++A+ a+++++k+gn++a+Wl+iC q++ +c++v +a+++ f+++l
  VIMSS9956214  92 LTGAVAATGAISQVGKSGNEHAGWLPICAQVQAYCSHVMGALIAGFVSLL 141
                   ***********************************************987 PP



Or compare VIMSS9956214 to CDD or PaperBLAST