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Align A0JND3 to PF04577 (DUF563)

A0JND3 has 527 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-32   99.1   0.4    3.3e-32   98.4   0.4    1.3  1  A0JND3    


Domain annotation for each sequence (and alignments):
>> A0JND3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.4   3.3e-32   3.3e-32       1     207 [.     245     470 ..     245     472 .. 0.76

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 3.3e-32
  DUF563   1 nnygHwlvdvlprlllleqlvlddddrilvpalaspq...pfqrellkllgirpekrikve.ld.epvhveklivpvppr...........ssggfqgallpk 87 
             n+y H ++d++  +++       ++d+++v    s++   + + +++k+  ++  + i+++ +d ++v+++++i++  pr            sg+ + +l+++
  A0JND3 245 NMY-HHFCDFINLYITQHVNNSFSTDVYVVMWDTSSYgygDLFSDTWKA--FTDYDVIHLKtYDaKRVCFKEAIFSLLPRmryglfyntplISGCQNTGLFRA 344
             689.******8877766666666667777444223334578899***55..444555555534447888886666666665533333333335555555566* PP

  DUF563  88 lrdrlrerlnlekrkkp....trvlyisRlkagsRrilNeeevl...kllpkrgfevvd..peslsfeeqiklfssakvivgphGsgltnliFmppgttviel 181
             ++++++ rln+++  +p    +rv+++ R ++ +R+ilN++e++   k +  +++++vd   ++l f +q+++ +++++++g+hG+glt+l+F+p  ++v el
  A0JND3 345 FSQHVLHRLNITQ-EGPkggkIRVTILAR-STEYRKILNQNELVnalKTVSTFEVQIVDykYKELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFEL 445
             *************.5555677********.99***********9555555578899***7777*******************************999****** PP

  DUF563 182 vppnrldnsfenlaallglkyayvlg 207
                 + ++++  la+l+g++y+ ++ 
  A0JND3 446 -YNCGDERCYLDLARLRGVHYITWRR 470
             .77799999*************9986 PP



Or compare A0JND3 to CDD or PaperBLAST