PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001354933.1 to PF04577 (DUF563)

NP_001354933.1 has 555 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-18   51.5   0.0    1.4e-17   50.7   0.0    1.4  1  NP_001354933.1  


Domain annotation for each sequence (and alignments):
>> NP_001354933.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.4e-17   1.4e-17      71     206 ..     368     513 ..     343     516 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.4e-17
          DUF563  71 pvpprssggfqgallpklrdrlrerlnlekr..........kkptrvlyisRlkagsRrilNeeevlkllpkrgfevvdpesls..feeqiklfs 153
                     p+p r ++++++     ++++lr +l+l++            +p r+l++s      Rr+lN eev+++ +  gf+v + e     ++e ++ ++
  NP_001354933.1 368 PHPAR-NRNPRNVTMADFARFLRGALALPRDrpavlggapgMRP-RLLVVSP-----RRLLNLEEVAAAADALGFDVASAEAGAddVAEFAARVN 455
                     33333.445555555599***********966666666555555.9989888.....*******************9997744446********* PP

          DUF563 154 sakvivgphGsgltnliFmppgttvielvppnrldns.....fenlaallglkyayvl 206
                      a+v+vg+ G+gltn +F+p +++++ +vp ++   +     +  +aa +gl+y  ++
  NP_001354933.1 456 AADVLVGVRGAGLTNQVFLPTEAVLVQIVPWGKKIEWvttssYGRAAAGMGLRYLEYY 513
                     ****************************999554444455699999999999997776 PP



Or compare NP_001354933.1 to CDD or PaperBLAST