NP_568825.1 has 534 amino acids
Query: DUF563 [M=209]
Accession: PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.5e-27 81.4 0.6 3.5e-26 78.7 0.0 2.4 3 NP_568825.1
Domain annotation for each sequence (and alignments):
>> NP_568825.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 0.13 0.13 73 122 .. 97 147 .. 76 176 .. 0.62
2 ? -1.0 0.1 0.087 0.087 116 138 .. 189 211 .. 175 225 .. 0.73
3 ! 78.7 0.0 3.5e-26 3.5e-26 3 207 .. 249 511 .. 247 513 .. 0.82
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.13
DUF563 73 pprssggfqgallpklrdrlrerlnlekr..kkptrvlyisRlkagsRrilN 122
p ++gg +++ +++ l +++ + p r+ ++sR + +
NP_568825.1 97 PRIGGGGEGSWFRCFYSETLQSSICEGRNlrMVPDRI-VMSRGGEKLEEVMG 147
4555555555555566666666666666577677566.99995444444433 PP
== domain 2 score: -1.0 bits; conditional E-value: 0.087
DUF563 116 gsRrilNeeevl.kllpkrgfevv 138
sRr++N +e+l +++++ g+++
NP_568825.1 189 VSRRLVN-DEMLnEYMQEGGIDRH 211
39*****.5555488888887765 PP
== domain 3 score: 78.7 bits; conditional E-value: 3.5e-26
DUF563 3 ygHwlvdvlprlllleqlvlddd.drilvpalaspqpfqrell.kllgirpekrikveldepvhveklivpvppr...............ssggfqga 83
+H ++d+ + ++ + ++l + +++v+ + ++e++ l+ r+ +pv+++++i++ ++ +
NP_568825.1 249 LFHTVTDWYSAYVSSRVTGLPNRpHVVFVDG--HCTTQLEETWtALF---SGIRYAKNFTKPVCFRHAILSPLGYetalfkglsgeidckG------- 334
45**********9999888888834444777..77788889994444...45888788899*****9999999997776666666666441....... PP
DUF563 84 llp..................klrdrlrerlnlekr.....kkp..........trvlyisR.......lkag....sRrilNeeevl.......... 127
++ +++r++++l+ kp ++vl++ R + + r++Neeev+
NP_568825.1 335 --DsahnlwqnpddkrtarisEFGEMIRAAFGLPVNrhrslEKPlssssssasvYNVLFVRRedylahpR--HggkvQSRLINEEEVFdslhhwvatg 428
..0333444456777888899*************988888844456666778899999****88877542..256899*********99999999999 PP
DUF563 128 .kllpkrgfevvd..peslsfeeqiklfssakvivgphGsgltnliFmppgttvielvppnrldnsfenlaallglkyayvlg 207
l+k g++ v+ ++++s+++q++ ++a+vi+g hG+glt+++ + p+tt+ e+++ +++fe +a+++gl+y++++
NP_568825.1 429 sTGLTKCGINLVNglLAHMSMKDQVRAIQDASVIIGAHGAGLTHIVSATPNTTIFEIISVEFQRPHFELIAKWKGLEYHAMHL 511
99999*********999****************************************999999999*************9975 PP
Or compare NP_568825.1 to CDD or PaperBLAST