SwissProt::Q5NDE5 has 578 amino acids
Query: DUF563 [M=209]
Accession: PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-24 72.1 0.1 1.1e-23 70.5 0.0 1.8 2 SwissProt::Q5NDE5
Domain annotation for each sequence (and alignments):
>> SwissProt::Q5NDE5
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.5 0.0 1.1e-23 1.1e-23 3 205 .. 163 390 .. 161 394 .. 0.76
2 ? -3.2 0.0 0.43 0.43 35 70 .. 455 490 .. 442 514 .. 0.54
Alignments for each domain:
== domain 1 score: 70.5 bits; conditional E-value: 1.1e-23
DUF563 3 ygHwlvdvlprl.llleqlvlddd.dril.vpalaspqpfqrellkllgirpekrikveldepvhveklivpvpprssggfqgallp..... 86
H ++d l + ++++q dd r++ + + +l++ll ++ + +d+ ++ kl + + ++ + + +++
SwissProt::Q5NDE5 163 LMHIFHDDLLPVyYTMQQYSDLDDeARLVfMEG--WGEGAHFDLYRLLSS-KQPLL---KDQLKTFGKLMCFTKSYVGLSKMTTWYQygfvq 248
568888886666366666666666644442333..555555578888888.77777...446667777777777775555555555555555 PP
DUF563 87 ................klrdrlrerlnlekr....kkptrvlyisRlkagsRrilNeeevl....kllpkrgfevvdpeslsfeeqiklfss 154
+++ +l+erln+++ + ++++ R + +R ilNe+e+l ++++ r++ +v++e+ sf i++ s
SwissProt::Q5NDE5 249 pqgpkanilisgneirQFASFLMERLNITREeeeeDD-DYIVVFKR--TTNRLILNEAELLlalaQEFQMRTV-TVSLEEQSFDNIIQIISR 336
6666899999999999**************8776433.6999****..************9755555555554.577*************** PP
DUF563 155 akvivgphGsgltnliFmppgttvielvppnrldns....fenlaallglkyayv 205
a ++v++hG+++ ++F+p+g++v+el +p ++++ + +la+l g++ yv
SwissProt::Q5NDE5 337 AAMLVSMHGAQMITSMFLPRGAAVVEL-FPYGVNPEqytpYKTLASLPGMDLQYV 390
***************************.888888888899999999988877665 PP
== domain 2 score: -3.2 bits; conditional E-value: 0.43
DUF563 35 spqpfqrellkllgirpekrikveldepvhve.kliv 70
s + +r+ lk l++ ++ ++ + ++ + e k+++
SwissProt::Q5NDE5 455 SFLDVLRDGLKKLNL-KKAKVASTVHPGRVREpKCQT 490
555778888988999.666665665533333343333 PP
Or compare SwissProt::Q5NDE5 to CDD or PaperBLAST