PaperBLAST – Find papers about a protein or its homologs

 

Align XP_008775949.1 to PF04577 (DUF563)

XP_008775949.1 has 474 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-27   82.4   0.2    4.1e-27   81.8   0.2    1.2  1  XP_008775949.1  


Domain annotation for each sequence (and alignments):
>> XP_008775949.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.2   4.1e-27   4.1e-27       2     188 ..     188     389 ..     187     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 4.1e-27
          DUF563   2 nygHwlvdvlprlllleqlvlddddrilvpalaspqpfqrell.kllgirpekrikveldepvhve.klivpvppr......ssggfqgallpkl 88 
                     n +H ++d l +l+l+ + ++ +   ++v +    + +++ +l  + g+++ + i    d +vh+  + iv    +      +   ++g+    +
  XP_008775949.1 188 NLFHDFTDLLVPLFLTARQFNGEV-QFIVTD--VKHWWIDKYLpVFRGLSKYQLIEFGRDDQVHCFkHMIVGLRRHkelsidPTKAPHGYSMVHF 279
                     44599****999955555555555.366677..789999999966677777777777777777777444444444466444444445555555** PP

          DUF563  89 rdrlrerlnlekr..........kkptrvlyisRlkagsRrilNeeevlkllpkrgfevvdpe..sls.feeqiklfssakvivgphGsgltnli 170
                     ++++r++++l +           kkp r+l+isR  ++sR i+N + +++  ++ g+evv  e  sls ++  +++++s++v++g+hG+gltn++
  XP_008775949.1 280 TQFMRSTYELGRDtvarieeyphKKP-RLLIISR--KQSRAITNVKRIAQMAEELGYEVVAAEanSLSnITRFAQIVNSCDVMMGVHGAGLTNMV 371
                     ************99***999998888.*******..99***********************77225557999999******************** PP

          DUF563 171 Fmppgttvielvppnrld 188
                     F+pp++tvi +vp +rl+
  XP_008775949.1 372 FLPPQATVIQIVPWGRLE 389
                     ************999876 PP



Or compare XP_008775949.1 to CDD or PaperBLAST