PaperBLAST – Find papers about a protein or its homologs

 

Align XP_020268466.1 to PF04577 (DUF563)

XP_020268466.1 has 387 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-23   69.2   0.7    4.1e-23   68.7   0.7    1.2  1  XP_020268466.1  


Domain annotation for each sequence (and alignments):
>> XP_020268466.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.7   4.1e-23   4.1e-23       2     202 ..     100     318 ..      98     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 4.1e-23
          DUF563   2 nygHwlvdvlprlllleqlvlddddrilvpalaspq....pfqrellkllgirpekrikveldepvhve..........klivpvpprssggfqg 82 
                      + H + + l +l++++q ++++  ++++ +  +++    +++ e+l   ++++  +i+   de+vh+           + +++ p+r   + + 
  XP_020268466.1 100 IF-HAFNNGLIPLYITSQHLNRQV-VFVILE--YRHwwytKYR-EIL--SQLSAYPIIDFSNDERVHCFpeaivglrfhETLMIDPSRMRDNKST 187
                     45.**********99999999999.555555..5562222454.566..3346688888888888888888888777877777777775555555 PP

          DUF563  83 allpklrdrlrerlnlekr........kkptrvlyisRlkagsRrilNeeevlkllpkrgfe..vvdpe.slsfeeqiklfssakvivgphGsgl 166
                       +++++d+  +  n+ +          kp +++++ R  ++ R i+Ne+ev++  +++gfe  v++pe ++ +    +  s++++++g+hG++l
  XP_020268466.1 188 VDFKTMLDQAYQNQNQIRKqkqdqnhaHKP-KLVIVAR--KQTRAIENEQEVVAMARDIGFEieVLRPEnTMQMSTIYESLSTCDIMMGVHGAAL 279
                     555566665555555555455555555666.*******..99******************9877888**************************** PP

          DUF563 167 tnliFmppgttvielvpp...nrldnsfenlaallglky 202
                     t+ +F++p++  i +vp       +++f  +a   g++y
  XP_020268466.1 280 THFFFLRPESLFIQIVPLgldELARMCFGDVAPKFGIEY 318
                     ************999775333444444666666666666 PP



Or compare XP_020268466.1 to CDD or PaperBLAST