PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::A0A178VBJ0 to PF04783 (DUF630)

SwissProt::A0A178VBJ0 has 640 amino acids

Query:       DUF630  [M=59]
Accession:   PF04783.16
Description: Protein of unknown function (DUF630)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    2.8e-26   77.8   4.7    1.8e-24   72.0   3.4    2.8  2  SwissProt::A0A178VBJ0  


Domain annotation for each sequence (and alignments):
>> SwissProt::A0A178VBJ0  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   3.4   1.8e-24   1.8e-24       1      59 []       1      59 [.       1      59 [. 0.98
   2 !    4.1   0.0     0.003     0.003      26      46 ..     434     454 ..     431     466 .. 0.84

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.8e-24
                 DUF630  1 MGcaaSklddeeavalCreRkrllkqaveaRyaLAaaHvaYlqSLrnvgaaLrrFaeee 59
                           MGc++S++d++e v++C++Rkr+lk++v+aR++L+ +H+ Yl+SLr+vg++L +F  +e
  SwissProt::A0A178VBJ0  1 MGCCQSRIDSKEIVSRCKARKRYLKHLVKARQTLSVSHALYLRSLRAVGSSLVHFSSKE 59
                           *******************************************************9876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.003
                 DUF630  26 qaveaRyaLAaaHvaYlqSLr 46 
                            q  ++ ++L +a+ +Y+qSL 
  SwissProt::A0A178VBJ0 434 QWHHSFCNLVKAQRDYIQSLT 454
                            55677799************7 PP



Or compare SwissProt::A0A178VBJ0 to CDD or PaperBLAST