PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10090140 to PF04852 (ALOG_dom)

VIMSS10090140 has 219 amino acids

Query:       ALOG_dom  [M=126]
Accession:   PF04852.16
Description: ALOG domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-71  223.6   0.1    5.1e-71  223.0   0.1    1.2  1  VIMSS10090140  


Domain annotation for each sequence (and alignments):
>> VIMSS10090140  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.0   0.1   5.1e-71   5.1e-71       5     126 .]      45     167 ..      42     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.0 bits;  conditional E-value: 5.1e-71
       ALOG_dom   5 eskP.kalsryesqkrrdwntfvqylknkrPPlelarcsgahvleflryldqfGktkvhaeacvffGqaepaapckcPlrqawGsldaliGrlraa 99 
                    +s+P +++srye+qkrrdwntf qyl+n+rPPl+l+rcsgahvleflryldqfGktkvh++ c f+G+++p+apc cPlrqawGsldaliGrlraa
  VIMSS10090140  45 SSSPsANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 140
                    45564789**************************************************************************************** PP

       ALOG_dom 100 feenggkaesnPfaaravrvylrevre 126
                    feenggk+e+nPf+aravr+ylrevr+
  VIMSS10090140 141 FEENGGKPETNPFGARAVRLYLREVRD 167
                    **************************8 PP



Or compare VIMSS10090140 to CDD or PaperBLAST