PaperBLAST – Find papers about a protein or its homologs

 

Align XP_010098512.1 to PF04852 (ALOG_dom)

XP_010098512.1 has 245 amino acids

Query:       ALOG_dom  [M=126]
Accession:   PF04852.16
Description: ALOG domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-72  226.7   0.4    5.6e-72  226.1   0.1    1.4  2  XP_010098512.1  


Domain annotation for each sequence (and alignments):
>> XP_010098512.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.1   0.1   5.6e-72   5.6e-72       5     126 .]      43     164 ..      39     164 .. 0.98
   2 ?   -3.4   0.0      0.58      0.58      16      24 ..     176     184 ..     170     205 .. 0.56

  Alignments for each domain:
  == domain 1  score: 226.1 bits;  conditional E-value: 5.6e-72
        ALOG_dom   5 eskPkalsryesqkrrdwntfvqylknkrPPlelarcsgahvleflryldqfGktkvhaeacvffGqaepaapckcPlrqawGsldaliGrlraa 99 
                      ++P++lsryesqkrrdwntf qylkn+rPPl+l+rcsgahvleflryldqfGktkvh ++c+f+G+++p+apc cPlrqawGsldaliGrlraa
  XP_010098512.1  43 PQQPPSLSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHSDTCPFYGKPQPPAPCPCPLRQAWGSLDALIGRLRAA 137
                     57889****************************************************************************************** PP

        ALOG_dom 100 feenggkaesnPfaaravrvylrevre 126
                     feenggk+e+nPf+aravr+ylrevr+
  XP_010098512.1 138 FEENGGKPETNPFGARAVRLYLREVRD 164
                     **************************8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.58
        ALOG_dom  16 sqkrrdwnt 24 
                     ++kr+   t
  XP_010098512.1 176 KKKRKKPTT 184
                     444433222 PP



Or compare XP_010098512.1 to CDD or PaperBLAST