PaperBLAST – Find papers about a protein or its homologs

 

Align XP_016732548.2 to PF04852 (ALOG_dom)

XP_016732548.2 has 216 amino acids

Query:       ALOG_dom  [M=126]
Accession:   PF04852.16
Description: ALOG domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-72  227.1   0.0    4.7e-72  226.3   0.0    1.3  1  XP_016732548.2  


Domain annotation for each sequence (and alignments):
>> XP_016732548.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   0.0   4.7e-72   4.7e-72       2     126 .]      55     179 ..      54     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 4.7e-72
        ALOG_dom   2 ssseskPkalsryesqkrrdwntfvqylknkrPPlelarcsgahvleflryldqfGktkvhaeacvffGqaepaapckcPlrqawGsldaliGrl 96 
                     sss+++P++lsrye+qkrrdwntf qyl+n+rPPl+l+rcsgahvleflryldqfGktkvh++ c+ffG+++p+apc cPlrqawGsldaliGrl
  XP_016732548.2  55 SSSSTSPSTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRL 149
                     678899***************************************************************************************** PP

        ALOG_dom  97 raafeenggkaesnPfaaravrvylrevre 126
                     raafee+ggk+e+nPf+aravr+ylrevr+
  XP_016732548.2 150 RAAFEEHGGKPEANPFGARAVRLYLREVRD 179
                     *****************************8 PP



Or compare XP_016732548.2 to CDD or PaperBLAST