PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10110474 to PF04859 (DUF641)

VIMSS10110474 has 559 amino acids

Query:       DUF641  [M=127]
Accession:   PF04859.16
Description: Plant protein of unknown function (DUF641)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-41  126.8   0.1    5.9e-41  126.0   0.1    1.4  1  VIMSS10110474  


Domain annotation for each sequence (and alignments):
>> VIMSS10110474  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.1   5.9e-41   5.9e-41       2     127 .]     156     280 ..     155     280 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 5.9e-41
         DUF641   2 raaaaealvaklFaavSalkaaYvqLQeAhvPydpekiqaADeavvseLkklselkrlylkkekkkaspeeseleaeiqeqrsllktyeivvkkle 97 
                    +++++e++++++F+a +a+k+aYv LQeAh+P+dpek++ AD a+v+eL+++ +l++++++++ +  s  + + +a +  +r+++++ye+vvk+l+
  VIMSS10110474 156 TVQEMEMVMDEVFTAAAAMKRAYVALQEAHSPWDPEKMHDADMAMVAELRRIGSLRERFRRMRGTG-SGGRRKNDAGRGMLREAVAPYEAVVKELK 250
                    6899**********************************************************8866.899999*********************** PP

         DUF641  98 selkakdseieeLrekLeeaerknkklekr 127
                    +e+k kd+eie+L+ek++ a+++n +  k+
  VIMSS10110474 251 KEVKVKDTEIENLKEKVKVASMANGNGGKK 280
                    *********************999887765 PP



Or compare VIMSS10110474 to CDD or PaperBLAST