PaperBLAST – Find papers about a protein or its homologs

 

Align NP_150545.1 to PF05077 (DUF678)

NP_150545.1 has 74 amino acids

Query:       DUF678  [M=74]
Accession:   PF05077.16
Description: Protein of unknown function (DUF678)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-39  118.1   3.4    8.2e-39  118.0   3.4    1.0  1  NP_150545.1  


Domain annotation for each sequence (and alignments):
>> NP_150545.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   3.4   8.2e-39   8.2e-39       1      74 []       1      73 [.       1      73 [. 0.97

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 8.2e-39
       DUF678  1 mdstagakkrrkrkpkttvededdcvtCSsCqSkLvkvsdvskvslselkvagkgntlsCaACgSeLrlLrdla 74
                 m+++ag+k+r+krkpkttv+d ++c+tCSsC+SkLvkvsd++kvsl+e+kv gkgn l+C+ACgSeLr+L++++
  NP_150545.1  1 MEDSAGNKRRKKRKPKTTVQD-EECMTCSSCYSKLVKVSDITKVSLNEYKVGGKGNILTCSACGSELRMLNGFV 73
                 7899****************5.68************************************************97 PP



Or compare NP_150545.1 to CDD or PaperBLAST