PaperBLAST – Find papers about a protein or its homologs

 

Align XP_008656860.1 to PF05142 (DUF702)

XP_008656860.1 has 360 amino acids

Query:       DUF702  [M=151]
Accession:   PF05142.16
Description: Domain of unknown function (DUF702)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-68  215.7   9.0    3.3e-68  215.1   9.0    1.3  1  XP_008656860.1  


Domain annotation for each sequence (and alignments):
>> XP_008656860.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   9.0   3.3e-68   3.3e-68       2     150 ..     123     289 ..     122     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 215.1 bits;  conditional E-value: 3.3e-68
          DUF702   2 gisCqdCgnqakkdCahrrCRtCCksrgfdCatHvkstwvpaakrrerqqqlaalqaqaaeaeaea..assasssekskrpre.e.saaasasst 92 
                     +++CqdCgnqakkdC h+rCRtCCksrgfdC+tHvkstwvpaa+rrerqq  a+ +a+++ a+a+a   ++++s+++sk+pr  + ++++s++st
  XP_008656860.1 123 ATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKSTWVPAARRRERQQLAASGSASSSPATASAaaVAASASASASKKPRLlSsQTTTSHTST 217
                     579*********************************************88877777666655555445666777788999997534778888888 PP

          DUF702  93 s.attsks.............eslpeevsseAvFrcvrvsavddgeeevaYqtavkigGhvfkGiLydqGle 150
                     s att++s             +slp++v+++AvF+cvrv++++dge+e+aYq++v+i+Gh+fkG+LydqG++
  XP_008656860.1 218 SnATTPRSfdttsshqdasfrDSLPRQVRAPAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPD 289
                     8655555566666666665555************************************************98 PP



Or compare XP_008656860.1 to CDD or PaperBLAST