PaperBLAST – Find papers about a protein or its homologs

 

Align YP_654490.1 to PF05152 (DUF705)

YP_654490.1 has 298 amino acids

Query:       DUF705  [M=304]
Accession:   PF05152.16
Description: Protein of unknown function (DUF705)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.6e-104  333.1  18.1   1.2e-103  332.9  18.1    1.1  1  YP_654490.1  


Domain annotation for each sequence (and alignments):
>> YP_654490.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.9  18.1  1.2e-103  1.2e-103       2     303 ..       4     297 ..       3     298 .] 0.97

  Alignments for each domain:
  == domain 1  score: 332.9 bits;  conditional E-value: 1.2e-103
       DUF705   2 kWlclrneralikrhvLllaeyadLkrlassdvlktieyivvkkandskvqnllkrlekrknyklekfkakddmrdlRkylkkkfklkvlGrifvlsd 99 
                  +W++++n+++++krh+L++++y+d++ + +  +l+ ieyiv+++ ++            + +yk +++ akd+m+d+R ++k++fk++++G+if l  
  YP_654490.1   4 RWIIFHNNWSIVKRHILFVNKYEDVQLI-DPITLNNIEYIVFQQPPK----------YWNLKYKQKILYAKDEMQDFRLKFKTAFKISYIGHIFTLYV 90 
                  8*************************99.89999*********9988..........45778999********************************* PP

       DUF705 100 kadvykleslkeWlvleiskvssiikelslyleikhvvvfDlDstLitdeeevelRdhavydsLdelkerh.vlvLWsYGnaehvaeslrevglersl 196
                  ++ +++l  l+eWlv+++ ++++    +   +ei+hvvvfD+DstLit+eeev++Rd a+y+sLdelk ++ +l+LWsYGn+ehv++sl +v+l+ ++
  YP_654490.1  91 RPATFDL--LNEWLVFDVNEINALAMRSVAFFEIPHVVVFDMDSTLITEEEEVRIRDDAIYKSLDELKMHNcILCLWSYGNREHVVHSLDKVKLN-GY 185
                  ******9..**************9999999****************************************9************************.** PP

       DUF705 197 FkiilsgGrtveeekld.....alkksflkekivlditnskrlPksvkvvlkyLsdknleffksitLvDDladnninYDffvkvkrakkPvnDWekyh 289
                  F+iils+Gr+ +e+  +     ++++ +++++++ldit  k+lPks+kvvl+yL ++n+++ ksitLvDDl+dnni YD+fv+++ +++Pv+DW+k+h
  YP_654490.1 186 FDIILSEGRRIGEYSVNeeedqQYDVFYKSTPFYLDITDFKNLPKSPKVVLWYLHKHNVNLIKSITLVDDLPDNNISYDNFVNLNICPVPVDDWQKWH 283
                  **********9999988888889999************************************************************************ PP

       DUF705 290 deilrnivdydsvl 303
                  ++il++i++y++ +
  YP_654490.1 284 NQILKYIINYEKNF 297
                  **********9876 PP



Or compare YP_654490.1 to CDD or PaperBLAST