PaperBLAST – Find papers about a protein or its homologs

 

Align NP_611287.1 to PF05267 (DUF725)

NP_611287.1 has 271 amino acids

Query:       DUF725  [M=121]
Accession:   PF05267.16
Description: Protein of unknown function (DUF725)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-30   92.4   9.8    1.1e-30   92.4   9.8    2.1  2  NP_611287.1  


Domain annotation for each sequence (and alignments):
>> NP_611287.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   9.8   1.1e-30   1.1e-30       2     121 .]      49     168 ..      48     168 .. 0.98
   2 ?    0.1   0.5      0.04      0.04      59      89 ..     180     209 ..     169     251 .. 0.54

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 1.1e-30
       DUF725   2 skeCfeeYlpelnevaeqyeaeytkCestaeeereeidakveeereqlessakelcsalqkCdsitdsldafeCyakagsenlkilysisanAselaa 99 
                  ++eCf++Y++ ++   ++y +ey+ C+++++ + e++ +++++ + +l++s+ e+c  l +Cd++++s +a++Cy+++g++ +k l +++anAs + +
  NP_611287.1  49 TVECFDYYNDVFKTEYAEYVDEYNLCVDKYDGGYEQVLEQYNSVVWDLSNSTFESCMFLLDCDKQNNSENALSCYSTEGPTYSKQLSNVAANASVSVS 146
                  689*********************************************************************************************** PP

       DUF725 100 slseeysaidtteeqCtnkaer 121
                  sl+++++++  t++qC+++++r
  NP_611287.1 147 SLRQQVETLVFTRDQCCSATSR 168
                  *****************99875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.04
       DUF725  59 alqkCdsitdsldafeCyakagsenlkilys 89 
                  +lqkC s ++ +   + +  ++s++++++ +
  NP_611287.1 180 DLQKCLSGENPVPERSTTT-TSSSSSSSTST 209
                  4444433333333222222.12222222222 PP



Or compare NP_611287.1 to CDD or PaperBLAST