PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001169473.2 to PF05542 (DUF760)

NP_001169473.2 has 390 amino acids

Query:       DUF760  [M=83]
Accession:   PF05542.15
Description: Protein of unknown function (DUF760)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-52  161.8   0.0      4e-28   84.0   0.0    2.7  2  NP_001169473.2  


Domain annotation for each sequence (and alignments):
>> NP_001169473.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0     4e-28     4e-28       2      83 .]      70     151 ..      69     151 .. 0.99
   2 !   75.0   0.0   2.5e-25   2.5e-25       1      83 []     256     373 ..     256     373 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 4e-28
          DUF760   2 LlryiqslkpeevkalskpaspevleaikqtvsgllgllpsesfevtietsrekLaqLlassmmtGYfLrnaeqRleLeksl 83 
                     L++ iq ++p +++ ++k + pe ++a+k+t+sg+lgllps++f+v++e+ ++   +Ll+ss+mtGY+Lrnae+Rl++e++l
  NP_001169473.2  70 LWNLIQDIEPLDLSVIQKDVAPETVDAMKRTISGMLGLLPSDQFRVIVEALWNPFFKLLVSSIMTGYTLRNAEYRLSFERNL 151
                     9******************************************************************************997 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 2.5e-25
          DUF760   1 eLlryiqslkpeevkalskpaspevleaikqtvsgllgl...................................lpsesfevtietsrekLaqLl 60 
                     +Ll+y++sl+pe+v++ls+++ p v+eai+++v+gll++                                     s  f+ +i++ r++La+Ll
  NP_001169473.2 256 DLLDYLRSLTPEKVAELSESSCPGVQEAIHSVVHGLLATlspkihskapppldntsggvlnlggedddcaelveNASLPFQPLISVPRDYLARLL 350
                     69*********************************************************************8654899***************** PP

          DUF760  61 assmmtGYfLrnaeqRleLeksl 83 
                     +++m++G+++r++e+RleL + l
  NP_001169473.2 351 FWCMLLGHYIRGLEYRLELAQLL 373
                     *******************9976 PP



Or compare NP_001169473.2 to CDD or PaperBLAST