PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10110308 to PF05553 (DUF761)

VIMSS10110308 has 130 amino acids

Query:       DUF761  [M=36]
Accession:   PF05553.15
Description: Cotton fibre expressed protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-16   45.6   1.9    3.2e-16   45.0   1.9    1.3  1  VIMSS10110308  


Domain annotation for each sequence (and alignments):
>> VIMSS10110308  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   1.9   3.2e-16   3.2e-16       1      32 [.      87     119 ..      87     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.2e-16
         DUF761   1 deevDakAEaFIakFreqlrLQRqeSi.kryqe 32 
                    de++D kAE+FIa+F+ ql+++Rq+S+ ++y++
  VIMSS10110308  87 DEDIDNKAEMFIANFYRQLKIERQISLeLKYCQ 119
                    69*************************989987 PP



Or compare VIMSS10110308 to CDD or PaperBLAST