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Align Q99LM2 to PF05600 (CDK5RAP3)

Q99LM2 has 503 amino acids

Query:       CDK5RAP3  [M=502]
Accession:   PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.9e-198  644.0   2.9   1.1e-197  643.8   2.9    1.0  1  Q99LM2    


Domain annotation for each sequence (and alignments):
>> Q99LM2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  643.8   2.9  1.1e-197  1.1e-197       2     502 .]       5     500 ..       4     500 .. 0.97

  Alignments for each domain:
  == domain 1  score: 643.8 bits;  conditional E-value: 1.1e-197
  CDK5RAP3   2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqeivklYe 102
               q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpes+ei+qllsg++i+Yfhc++Iv++lk tea++kniFGryssqrmkdWqeiv+lYe
    Q99LM2   5 QHVPIDIQTSKLLDWLVDRRHCNLKWQSLVLTIREKINTAIQDMPESQEIAQLLSGSYIHYFHCLRIVDLLKGTEASTKNIFGRYSSQRMKDWQEIVSLYE 105
               789************************************************************************************************** PP

  CDK5RAP3 103 kdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekiaeelkseklskai 203
               kdn+yL E++++lvrnv+YEiPslkkqiak+qq+++e++rKe++ +  aae++++++++ckq+gi+G+nvr+ELl+lvk+Lps +++i + ++s  l +ai
    Q99LM2 106 KDNTYLVELCSLLVRNVSYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAGAQS--LGEAI 204
               **********************************************************************************************..***** PP

  CDK5RAP3 204 eyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw...........dtsveaaeIdwdlekveeeae 293
               ++Y+a+vefv+++   ++vlp+l++vq+kgn tvyewrtg++ps +e+p+ e+  e+ + e+   eiDw           ++ +e+ +Idw+  + e+ ++
    Q99LM2 205 DLYQACVEFVCDS-PTEQVLPMLRYVQKKGNSTVYEWRTGTEPSVVERPQLEEPPEQVQ-ED---EIDWgdfgveavsdsGIVAETPGIDWGI-SLES-EA 298
               *************.778*****************************9999977666555.44...6************99888999******3.3333.34 PP

  CDK5RAP3 294 aeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfqsapevlqqqtk 394
               ++  +++Idwg+  +a+ +i+v e+g++      a+egva+g++al+lle++e+Rn+++d+L+ELe+FL+qR+vE+see+ ++ls+sqfq ap +lq qtk
    Q99LM2 299 KDAGADKIDWGDDAAAASEITVLETGTE------APEGVARGSDALTLLEYPETRNQFIDELMELEIFLSQRAVEMSEEA-DILSVSQFQLAPAILQGQTK 392
               6778899*******************97......789******************************************8.******************** PP

  CDK5RAP3 395 eeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskrykg 495
               e++ +++s+ ++++ +lt+ ++qhL++i++s+ryvdr++e L+qklk+ + l+ k++ + ek++e+ +++++lepkl+ l++kTrel+k+ie+d+skry+g
    Q99LM2 393 EKMLSLVSTLQQLIGRLTSLRMQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVEKQQEALQEQAALEPKLDLLLEKTRELQKLIEADISKRYSG 493
               ***************************************************************************************************** PP

  CDK5RAP3 496 rpVnlmG 502
               rpVnlmG
    Q99LM2 494 RPVNLMG 500
               ******9 PP



Or compare Q99LM2 to CDD or PaperBLAST