VIMSS10104616 has 549 amino acids
Query: CDK5RAP3 [M=502]
Accession: PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-175 569.0 4.4 6e-175 568.8 4.4 1.0 1 VIMSS10104616
Domain annotation for each sequence (and alignments):
>> VIMSS10104616
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 568.8 4.4 6e-175 6e-175 2 502 .] 8 537 .. 7 537 .. 0.92
Alignments for each domain:
== domain 1 score: 568.8 bits; conditional E-value: 6e-175
CDK5RAP3 2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmp.eseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqe 96
qnlpIDI++s+L +WLvdR+++p+dW+k+++ ir ki ++++++p e ++++q+l++e i+Y+++kk++eil +t+ +s+niFGr+ s++ + W++
VIMSS10104616 8 QNLPIDITFSRLGEWLVDRKRIPADWRKRVAVIRVKILKEFSSLPkEIDPFFQTLDPEVIGYLEVKKVYEILLKTTPESRNIFGRL-SGASGVWEA 102
89************************************************************************************.********* PP
CDK5RAP3 97 ivklYekdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekiae 192
iv+++ekd++yL+EaAqi+++nvnYEiP+lkkq++k+qqq++el+rKead+krs a +a+kye+ac++lg++G+nvr+ELle++++Lps+f+ki+e
VIMSS10104616 103 IVRAFEKDHIYLGEAAQIIIQNVNYEIPYLKKQVQKVQQQMTELDRKEADIKRSVALSATKYEDACRELGLQGNNVRRELLETASSLPSTFSKILE 198
************************************************************************************************ PP
CDK5RAP3 193 elkseklskaieyYkafvefvhte..kkesevlpllkevqekg.nttvyewrtgekpskieepeeevkkeeeeaeeeeseiDwdtsveaaeIdwd. 284
+++s+++ a+eyY+a+v++vhte k + vl++lk+++e+ + +v+ g + ++i+++e+ + ++ +a++ +iDwd++ve+ eIdwd
VIMSS10104616 199 VINSDSVTGAMEYYSAYVQDVHTEkdKPLRIVLQNLKYIRENPpSLSVFGDSEGLDADNIQSSENANGTD--AAAD---SIDWDITVETPEIDWDv 289
************************8777899***********8688999999999888876666633322..2233...6**************** PP
CDK5RAP3 285 ...........................lekveeeaeaeeeeaeIdwgeseeaevdisveesgedveeees...........aaegvakgdealsll 342
kvee++ e + +eI+w d+sve+++++++ +++ ++++v + s+l
VIMSS10104616 290 smveevdsgndlgsyeivnasdipensPFKVEESQGLEVDVSEISW--------DVSVETPQVEEIGDSAllesnqtqltdSTTQVLGSGGERSQL 377
*******************999999884567788889999999999........777777777766666676665444333333444444444*** PP
CDK5RAP3 343 edkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfqsapevlqqqtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeq 438
++eyRnk+lddL+E++aFL+qRl+El++e+t +l++++++++p+vlqq+++e+ie m+ +++ ++slltnkk ++L++i++skr++drlv++Le+
VIMSS10104616 378 LETEYRNKILDDLYEVKAFLNQRLIELRNEDTLSLQHHVQAVSPMVLQQYSPETIEPMVVDISMAISLLTNKKSRDLIMILNSKRFLDRLVSELEE 473
************************************************************************************************ PP
CDK5RAP3 439 klkaeeklkeklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskrykgrpVnlmG 502
k++ e kl+e+lkd+ ++r+el+n+ls+ +pk+e++++kTrelk+++e++ls++++grpVn+ G
VIMSS10104616 474 KKHREVKLRESLKDVGRRRMELQNSLSAIWPKQEAALSKTRELKELCETSLSSMFDGRPVNIRG 537
**************************************************************87 PP
Or compare VIMSS10104616 to CDD or PaperBLAST