PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011523599.1 to PF05600 (CDK5RAP3)

XP_011523599.1 has 531 amino acids

Query:       CDK5RAP3  [M=502]
Accession:   PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-195  636.7   0.4   1.8e-195  636.5   0.4    1.0  1  XP_011523599.1  


Domain annotation for each sequence (and alignments):
>> XP_011523599.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  636.5   0.4  1.8e-195  1.8e-195       2     502 .]      30     528 ..      29     528 .. 0.97

  Alignments for each domain:
  == domain 1  score: 636.5 bits;  conditional E-value: 1.8e-195
        CDK5RAP3   2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqe 96 
                     q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpeseei+qllsg++i+Yfhc++I+++lk tea++kniFGryssqrmkdWqe
  XP_011523599.1  30 QHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQE 124
                     789******************************************************************************************** PP

        CDK5RAP3  97 ivklYekdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekia 191
                     i+ lYekdn+yL E++++lvrnvnYEiPslkkqiak+qq+++e++rKe++++  aae++++++++ckq+gi+G+nvr ELl+lvk+Lps +++i 
  XP_011523599.1 125 IIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIG 219
                     *********************************************************************************************** PP

        CDK5RAP3 192 eelkseklskaieyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw.............. 272
                     +++++ +l +ai+ Y+a v fv+++   ++vlp+l++vq++gn tvyewrtg++ps +e+p+ e+  e+ + e+   +iDw              
  XP_011523599.1 220 AAAQQ-SLGEAIDVYQASVGFVCES-PTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVA-ED---AIDWgdfgveavsegtds 308
                     ****9.*****************99.788*****************************9999976665554.44...6****************9 PP

        CDK5RAP3 273 dtsveaaeIdwdlekveeeaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlv 367
                     ++s+eaa+Idw+     e++ ++  +++Idwg+ ++ +++i+v e+g++      a+egva+g +al+lle++e+Rn++ld+L+ELe+FL qR+v
  XP_011523599.1 309 GISAEAAGIDWG--IFPESDSKDPGGDGIDWGD-DAVALQITVLEAGTQ------APEGVARGPDALTLLEYTETRNQFLDELMELEIFLAQRAV 394
                     999*********..566677788999******9.999**********98......789************************************* PP

        CDK5RAP3 368 ElseestsvlslsqfqsapevlqqqtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrn 462
                     Elsee+ +vls+sqfq ap +lq qtke++ +m+s  e+++ +lt+ +lqhL++i++s+ryvdr++e L+qklk+ + l+ k++ + +k++e+ +
  XP_011523599.1 395 ELSEEA-DVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALE 488
                     *****8.**************************************************************************************** PP

        CDK5RAP3 463 qlselepkleklvkkTrelkkeiekdlskrykgrpVnlmG 502
                     ++++lepkl+ l++kT+el+k+ie+d+skry+grpVnlmG
  XP_011523599.1 489 EQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMG 528
                     ***************************************9 PP



Or compare XP_011523599.1 to CDD or PaperBLAST