XP_011523599.1 has 531 amino acids
Query: CDK5RAP3 [M=502] Accession: PF05600.16 Description: CDK5 regulatory subunit-associated protein 3 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-195 636.7 0.4 1.8e-195 636.5 0.4 1.0 1 XP_011523599.1 Domain annotation for each sequence (and alignments): >> XP_011523599.1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 636.5 0.4 1.8e-195 1.8e-195 2 502 .] 30 528 .. 29 528 .. 0.97 Alignments for each domain: == domain 1 score: 636.5 bits; conditional E-value: 1.8e-195 CDK5RAP3 2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqe 96 q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpeseei+qllsg++i+Yfhc++I+++lk tea++kniFGryssqrmkdWqe XP_011523599.1 30 QHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQE 124 789******************************************************************************************** PP CDK5RAP3 97 ivklYekdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekia 191 i+ lYekdn+yL E++++lvrnvnYEiPslkkqiak+qq+++e++rKe++++ aae++++++++ckq+gi+G+nvr ELl+lvk+Lps +++i XP_011523599.1 125 IIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIG 219 *********************************************************************************************** PP CDK5RAP3 192 eelkseklskaieyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw.............. 272 +++++ +l +ai+ Y+a v fv+++ ++vlp+l++vq++gn tvyewrtg++ps +e+p+ e+ e+ + e+ +iDw XP_011523599.1 220 AAAQQ-SLGEAIDVYQASVGFVCES-PTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVA-ED---AIDWgdfgveavsegtds 308 ****9.*****************99.788*****************************9999976665554.44...6****************9 PP CDK5RAP3 273 dtsveaaeIdwdlekveeeaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlv 367 ++s+eaa+Idw+ e++ ++ +++Idwg+ ++ +++i+v e+g++ a+egva+g +al+lle++e+Rn++ld+L+ELe+FL qR+v XP_011523599.1 309 GISAEAAGIDWG--IFPESDSKDPGGDGIDWGD-DAVALQITVLEAGTQ------APEGVARGPDALTLLEYTETRNQFLDELMELEIFLAQRAV 394 999*********..566677788999******9.999**********98......789************************************* PP CDK5RAP3 368 ElseestsvlslsqfqsapevlqqqtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrn 462 Elsee+ +vls+sqfq ap +lq qtke++ +m+s e+++ +lt+ +lqhL++i++s+ryvdr++e L+qklk+ + l+ k++ + +k++e+ + XP_011523599.1 395 ELSEEA-DVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALE 488 *****8.**************************************************************************************** PP CDK5RAP3 463 qlselepkleklvkkTrelkkeiekdlskrykgrpVnlmG 502 ++++lepkl+ l++kT+el+k+ie+d+skry+grpVnlmG XP_011523599.1 489 EQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMG 528 ***************************************9 PP
Or compare XP_011523599.1 to CDD or PaperBLAST