XP_626914.1 has 471 amino acids
Query: CDK5RAP3 [M=502]
Accession: PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-17 47.9 30.0 7.1e-15 40.7 10.3 2.1 2 XP_626914.1
Domain annotation for each sequence (and alignments):
>> XP_626914.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.7 10.3 7.1e-15 7.1e-15 8 196 .. 3 217 .. 1 252 [. 0.83
2 ! 12.5 12.6 2.7e-06 2.7e-06 306 495 .. 278 462 .. 233 470 .. 0.73
Alignments for each domain:
== domain 1 score: 40.7 bits; conditional E-value: 7.1e-15
CDK5RAP3 8 IqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmp.esee.......ilqllsgeeinYfhckkIveil.keteadskniFGryssqrmkdWqe 96
Iq+s L + L+ + vp++W lk+i + +e +++ ++++ +l+ ++++e nY k +e l ++ e + k+iFG y s+ + + +
XP_626914.1 3 IQFSFLNEFLLGKKLVPRNWGILLKDIEKDLNELVKSNIgSNDQlseevkiYLNNIKDDEKNYKFLNKLIEFLiSSKEGEMKTIFGNYKSKLINELLN 100
99****************************99999998878888555555555555579**************999999******************* PP
CDK5RAP3 97 ivklYekdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgik................GknvreELle 178
i k Y+ n+yL EaA+ +++ l k+ ++ ++++++K ++l+ ++ + + +++++ g++ +++ + L++
XP_626914.1 101 IKKRYQDKNLYLSEAAKEANYILKFGLSHLEKEQREIVSKIKNTRKKVQELNTTKDKNIELINSELSSFGLEniityskvglntdyfpRDKISDGLQN 198
******************************************************99999999999999998877777777777777766666666666 PP
CDK5RAP3 179 lv.keLpslfekiaeelks 196
k+L ++ +++ ee+++
XP_626914.1 199 FYdKKLKHFSSELFEEINE 217
6556666666666666665 PP
== domain 2 score: 12.5 bits; conditional E-value: 2.7e-06
CDK5RAP3 306 seeaevdisveesgedveeeesaaegvakgdeal..slledkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfqsapevlqqqtkeeieeml 401
+++ ++++ +++ e+++++e+ ++ v +++ l l+ed+++ kll +L+E+e+F+k lvE + ++ ++ +++ ++i e+
XP_626914.1 278 ENKYSIELIDDSTIENSVSDENFKNFVILEESPLliRLFEDRQLFGKLLMELYEIESFIKRSLVESFGME--------WKAKINMNTDTKYKTIIEFY 367
3333455555555555555555555555555555679****************************99997........233333455678899***** PP
CDK5RAP3 402 sevesvlslltnkklqhLlliktskryv.drlvesLeqklkaeeklkeklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskrykg 495
+ v++++ +lt++ +++++k k v ++ ve + + +++ ++ +++le++ +++++ lse++++ ++ ++k +e +++++l + +k+
XP_626914.1 368 NLVKKIIGKLTESENYEIITFKRNKYVViEKKVEVFFSIFNNIINQQNLINNLENRIKQYHQDLSESQQRYTESTQKLKENVILLQNELKNLLKK 462
*********************98754324788888888888888888888888888888888888888887777777777655566666555544 PP
Or compare XP_626914.1 to CDD or PaperBLAST