PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9DD02 to PF05603 (Hikeshi-like_N)

SwissProt::Q9DD02 has 197 amino acids

Query:       Hikeshi-like_N  [M=133]
Accession:   PF05603.16
Description: Hikeshi-like, N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    7.6e-43  131.7   0.0      1e-42  131.3   0.0    1.2  1  SwissProt::Q9DD02  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9DD02  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0     1e-42     1e-42       2     128 ..       6     127 ..       5     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1e-42
     Hikeshi-like_N   2 vsGrpvqtdlqqvsetkfvftipkaesishivvFllpnvtlppgtaAavYfqlp.pdaepefklLGaisneKpSAiFkvsnlkksskaasaa 92 
                        v+Gr+vqt++qqv e kfvf++p+ e+i+h+vvF+l+++++p+g++++vYf++p +++ p ++lLG+++n+KpSAiFk+s+lk+        
  SwissProt::Q9DD02   6 VAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPdSNGVPVWQLLGFVTNGKPSAIFKISGLKSG------- 90 
                        89****************************************************8789***********************9953....... PP

     Hikeshi-like_N  93 eeeeeeidede.aeesselqiGIsiEpleqveaqlae 128
                        e +++ + + +  ++ s +qiGIs+E l+++++q++ 
  SwissProt::Q9DD02  91 EGSQHPFGAMNiVRTPSVAQIGISVELLDSLAQQTPV 127
                        34455565555566789*****************976 PP



Or compare SwissProt::Q9DD02 to CDD or PaperBLAST