PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS17178 to PF05656 (DUF805)

VIMSS17178 has 121 amino acids

Query:       DUF805  [M=107]
Accession:   PF05656.18
Description: Protein of unknown function (DUF805)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-42  128.1   3.8      1e-41  128.0   3.8    1.0  1  VIMSS17178  


Domain annotation for each sequence (and alignments):
>> VIMSS17178  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   3.8     1e-41     1e-41       1     107 []      11     117 ..      11     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 1e-41
      DUF805   1 yfsfsGRarRkeywwfvlvlvlvlivlllllallgas.allgsalalllalllllpsllavtvRRlHDigrsgwwlllllipliglivllvllllpgtp 98 
                 y+ f+GRarRkeyw+f+lv++++++vl+ll+ +lg++ a  +++l++++ +l++lp+ +av++RRlHD++rs+ww+ll+lip+ig+++++v+ ++ gtp
  VIMSS17178  11 YVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQrAGGEGILTTIYGILVFLPW-WAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTP 108
                 899**********************************9889999*************.***************************************** PP

      DUF805  99 genrYGpdp 107
                 genr+Gpdp
  VIMSS17178 109 GENRFGPDP 117
                 ********8 PP



Or compare VIMSS17178 to CDD or PaperBLAST