PaperBLAST – Find papers about a protein or its homologs

 

Align P46125 to PF05661 (DUF808)

P46125 has 305 amino acids

Query:       DUF808  [M=303]
Accession:   PF05661.16
Description: Protein of unknown function (DUF808)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-117  378.2  15.8   1.6e-117  377.9  15.8    1.0  1  P46125    


Domain annotation for each sequence (and alignments):
>> P46125  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.9  15.8  1.6e-117  1.6e-117       1     301 [.       6     291 ..       6     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 377.9 bits;  conditional E-value: 1.6e-117
  DUF808   1 sgllaLlDdiaalaklaaaslDDvaaaakkaakkaagvvvDDlavtaqqvsgvkaeRElpvvwkiakgSllNKlvillPaalllsafapwaitplLmlGgayL 103
             s+ll+LlDdia+l       lDD++++ k aakk+agv++DDl+++aqqvsgv+a+RElpvvw +akgSl+NK vil+P+al++saf+pwaitplLm+Gga+L
  P46125   6 SSLLTLLDDIATL-------LDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWGVAKGSLINK-VILVPLALIISAFIPWAITPLLMIGGAFL 100
             69***********.......*****************************************************.***************************** PP

  DUF808 104 cfEGaeKvlekl....hkkee....keeeeeekeeadlaelEkekvkgairtDfiLsaEiivialgevaeeslltqvlvlvvvavlitvgVYGvValivklDd 198
             cfEG+eKvl++l    h  +e    ++++ e+ +++d  ++Ek+k+kgairtDfiLsaEi++i+lg vae++ll+qvlvl+ +a+++tvgVYG+V++ivk+Dd
  P46125 101 CFEGVEKVLHMLearkH--KEdpaqSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVAITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDD 201
             ************86422..22233233333444555999**************************************************************** PP

  DUF808 199 vGlalakkkesklaralGrglvkamPkllkllsvvGtiAmllVgGgilvhgleelglealaelvhelaeavaeaaaalggvlewlvetllsavvGlvvGavvv 301
             +G++la+ k+s+l++alG+gl+ ++P+l+k+ls+vGt+Am+lVgGgi+vhg++          +h+++e++a    + ++v++++ +t+l++++G+++G +vv
  P46125 202 LGYWLAE-KSSALMQALGKGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIA---------PLHHAIEHFAG---QQSAVVAMILPTVLNLILGFIIGGIVV 291
             *******.6699*****************************************.........88999988887...45789*******************998 PP



Or compare P46125 to CDD or PaperBLAST