PaperBLAST – Find papers about a protein or its homologs

 

Align P86182 to PF05667 (CCDC22_CC)

P86182 has 627 amino acids

Query:       CCDC22_CC  [M=477]
Accession:   PF05667.15
Description: CCDC22 protein coiled-coil region
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.6e-172  559.4   9.4   5.4e-172  559.2   9.4    1.0  1  P86182    


Domain annotation for each sequence (and alignments):
>> P86182  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  559.2   9.4  5.4e-172  5.4e-172       1     477 []     128     597 ..     128     597 .. 0.97

  Alignments for each domain:
  == domain 1  score: 559.2 bits;  conditional E-value: 5.4e-172
  CCDC22_CC   1 raiaaairsqlalpwlpeeckrpktqrlqgsrklrrfrtqplslpesskgkskklskevkefyse.llppvtaqlssrasvvaSlleknaaelaaaqewe 99 
                rai+++ir qlalpw+p+ +++pk qrlqgs+ +++f++++l+lpe +         e +ef+++ ll p ++q+++   ++aSlle +a +l+++ +++
     P86182 128 RAIGSQIRDQLALPWVPPLLRTPKVQRLQGSALQQAFHSSRLVLPELNCR------GEPREFQASpLLLPAPSQVPQLLGRAASLLEHHAIQLCQHVNRD 221
                79*******************************************77755......6889**************************************** PP

  CCDC22_CC 100 eewneqgl..ssrlteeeyrkrkkkkllkriaeqlrsaalkseeaesgasksksdlsellssfseksetdsslakgsrfthaeklqftqee...aaaaas 194
                   +e+++  +srl  +e  +  +++l+k++ e+lr+++ + +     a ++ +dl e+l+++++k+ t+    kgsrfth+ek++f  e    aa+ a+
     P86182 222 CPGDEDRVrwASRLPSQEDPRAPQQRLHKQLIEHLRQSWGPLG-----APTQVRDLGEMLQAWGAKAMTGV--PKGSRFTHSEKFTFHLEPqvqAAQVAD 314
                *********99****************************8866.....5679***********88888877..**************7776443444777 PP

  CCDC22_CC 195 saakkaeteeelkkqreeeleeLqeqleelessieeleeelkklessikqveeeleekeeeneelekevkvkkktldLLpdaeeniakLqklveasaqrl 294
                 +a++++ e+++++++eeele+L+eql +++++iee+e+++k+l +++ qve e+++ e++ +e+e+ +++k +t++LLpd  +n+ kLq +ve+saqrl
     P86182 315 IPAASQRPEQDTRAAQEEELESLREQLASVNHNIEEVEANMKSLGMNLVQVETECRQSELSVAEQEQALRLKSRTVELLPDGAANLTKLQLVVESSAQRL 414
                78889999******************************************************************************************** PP

  CCDC22_CC 295 veLaeqWekhRvpLieeyrelkeaksekesesqrkleeikelrekikevaeeakkkeelykqLvaeyeklpkdvsRsaYtrRIlEIvknIkKQkeeItki 394
                ++La+qWekhRvpL++eyr+l++ ++ +e+es+r+l ei+el+++++ +aeea++kee+ykqLv+e+e+lpkdvsR aYt+RIlEIv+nI+KQkeeItki
     P86182 415 IHLASQWEKHRVPLLAEYRHLRKLQDCRELESSRRLVEIQELHQSVRAAAEEARRKEEVYKQLVSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKI 514
                **************************************************************************************************** PP

  CCDC22_CC 395 lsDtkslqkeiNsltgkldRtfavtdelvFkdAKkdesvrkaYKyLaslhenceqLiqtveetGtimreirdLeeqIetesqk 477
                lsDtk+lqkeiNsl+gkldRtfavtdelvFkdAKkd++vrkaYKyLa+lhenc+qLiqt+e+tGtimre+rdLeeqIete +k
     P86182 515 LSDTKELQKEINSLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRDLEEQIETEMGK 597
                ********************************************************************************987 PP



Or compare P86182 to CDD or PaperBLAST