PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1301326 to PF05728 (UPF0227)

VIMSS1301326 has 227 amino acids

Query:       UPF0227  [M=187]
Accession:   PF05728.16
Description: Uncharacterised protein family (UPF0227)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-10   27.0   0.0    4.4e-10   26.0   0.0    1.5  1  VIMSS1301326  


Domain annotation for each sequence (and alignments):
>> VIMSS1301326  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.4e-10   4.4e-10       2     174 ..       3     205 ..       2     211 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.4e-10
       UPF0227   2 llYlHGFdSSPrshkaqlllqfiaedvlaielsvlklkhdpqqalkel.........eklvaelgdekpllvGssLGGyya..trlgerfglrq.vl 86 
                   +l+l GF S  +s ka  +  ++ +++++ ++ +   + +++ a k           +++v+ l++  ++lvGss+GG++a  t l++   ++  v 
  VIMSS1301326   3 VLFLGGFMSNMQSTKATAIFDYCMSHKINCTVFDYFGHGNSSAAFKDCtlscwkqccDHVVELLTETPLVLVGSSMGGWLAllTALSFPERVKGlVG 99 
                   799****************************999888877777776541111111114455555555599**********95556666666666889 PP

       UPF0227  87 lnPalkpeenlagklgeqanqytgetyvleeyhiielkalevsr...............lkrperilvllskqDevldyrravaeyraaae.....i 163
                   l+Pa  ++e+++    e++  +    +++e +   +   + +++               +    +i+++++ +D  ++y+ +va  ++++       
  VIMSS1301326 100 LAPAPDFTETIDMS--EEEKAHLASAGYVELRSKEDCSHIITQKllldgknhlllnkpeIPLDCPIVLIHGMADVLVPYQTSVAIAEKVRSnnvevH 194
                   ****9999999755..555666667777777666666666555557778889996665555556788999999999999988876655443111114 PP

       UPF0227 164 veddgdHkfkd 174
                    ++dgdH+++d
  VIMSS1301326 195 LIKDGDHGLHD 205
                   67888888876 PP



Or compare VIMSS1301326 to CDD or PaperBLAST