PaperBLAST – Find papers about a protein or its homologs

 

Align NP_010369.3 to PF05832 (DUF846)

NP_010369.3 has 199 amino acids

Query:       DUF846  [M=139]
Accession:   PF05832.16
Description: Eukaryotic protein of unknown function (DUF846)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-52  163.6   9.4    1.8e-52  163.3   9.4    1.1  1  NP_010369.3  


Domain annotation for each sequence (and alignments):
>> NP_010369.3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   9.4   1.8e-52   1.8e-52       1     139 []      15     156 ..      15     156 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 1.8e-52
       DUF846   1 shpvallfhllfkllailvyllgslfsssfilsfvivilllaldfwlvknitGrlLVglrWwnevde.dgeskwvFesr...eekrkvnaidsklFWl 94 
                  shp++l+fhl+ k+++i++y++gs+f  +f+ +f++v+lll++df+l+knitGr+LV+lrWw++ ++ +++s+++Fes+    +  ++naidsklFW+
  NP_010369.3  15 SHPLLLSFHLAGKAVPIVFYIIGSMFL-NFTPQFITVVLLLSFDFYLTKNITGRKLVQLRWWYDSTDvNKDSNFTFESYkqyAPGPPINAIDSKLFWW 111
                  7***********************996.9***********************************999788999******777778888********** PP

       DUF846  95 alyvtpllwilllilallslkflwlllviialvlsltnllgfvkc 139
                  ++yvtp++w ++++l+ll+lk+++l+lvi+a++l+++n++gf  c
  NP_010369.3 112 SMYVTPVIWGVFAVLCLLRLKIFYLILVIVAMCLTAWNTYGFRCC 156
                  ******************************************999 PP



Or compare NP_010369.3 to CDD or PaperBLAST