PaperBLAST – Find papers about a protein or its homologs

 

Align NP_660344.2 to PF05832 (DUF846)

NP_660344.2 has 276 amino acids

Query:       DUF846  [M=139]
Accession:   PF05832.15
Description: Eukaryotic protein of unknown function (DUF846)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-49  152.1   7.5    6.7e-49  151.7   7.5    1.1  1  NP_660344.2  


Domain annotation for each sequence (and alignments):
>> NP_660344.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   7.5   6.7e-49   6.7e-49       1     119 [.      32     154 ..      32     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 6.7e-49
       DUF846   1 shpvallfhllfklaailvylfgslfsnsfilkfiililllalDfwvvknisGrlLvglrwwnevdedgeskwvFesa....dekrkvnpidskvFWl 94 
                  +hpva +fhl+f+++ai+v l+++l+s+sfi++++++illl++Dfw vkn++Grl+vglrwwn++dedg+s+wvFes+    +e+++v++++s++FWl
  NP_660344.2  32 RHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRkessQENKTVSEAESRIFWL 129
                  59****************************************************************************8887778888********** PP

       DUF846  95 llyvtpllwvvllilailklkflwl 119
                   l+++ +lwv++++ a+++++++wl
  NP_660344.2 130 GLIACSVLWVIFAFSALFSFTVKWL 154
                  ************************8 PP



Or compare NP_660344.2 to CDD or PaperBLAST