PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS61834 to PF05853 (BKACE)

VIMSS61834 has 294 amino acids

Query:       BKACE  [M=274]
Accession:   PF05853.15
Description: beta-keto acid cleavage enzyme
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.3e-100  321.0   0.0   3.7e-100  320.8   0.0    1.0  1  VIMSS61834  


Domain annotation for each sequence (and alignments):
>> VIMSS61834  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.8   0.0  3.7e-100  3.7e-100       2     274 .]       5     291 ..       4     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: 320.8 bits;  conditional E-value: 3.7e-100
                 B-EEEE-S-SSS-CCC-TTS--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHHTTSEEEE-SS................. CS
       BKACE   2 viitvavtGavttkednpalPvtpeeiaeeaveaaeaGAaivHlHaRdpedgrpsldpelyrevlaairekepdviinlttg................. 83 
                 vi+t+avtGa +t  ++pa+Pvtp++iae+a+eaa+aGA+++H+H+Rdp++g+ps d++lyrev+++ire+++dviinlt g                 
  VIMSS61834   5 VIVTCAVTGAGDTVGRHPAIPVTPKQIAEAAIEAARAGATVAHCHVRDPATGKPSRDVALYREVVERIRESDTDVIINLTAGmggdleigkgeqplefg 103
                 8*********************************************************************************99999999999999998 PP

                 .TTTTG-HHHHHTHHHHH--SEEEEE-S-EEEB-SGCEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-SSEEEEEEE--CTS-- CS
       BKACE  84 .gastmsaeerlavlealkpemaslnlgslnfalkdlvfentpedieellrrmaeagvkpeievfdaghlrnvkrlieeGllkgpllvqlvlgvpggmp 181
                  g++ + + erl+++e+l pe+++l++g+lnf+ +d+++  tp+++++ +rr+ e+gvk e+e+fd+ghl+ +k++++eGll++pl +q++lg+p+g+p
  VIMSS61834 104 aGTDLVGPLERLRHVEELLPEICTLDCGTLNFGDGDYIYVSTPAQLRAGARRITELGVKAELEIFDTGHLWFAKQMLKEGLLEDPL-FQICLGIPWGAP 201
                 8777888999************************************************************************9875.8*********** PP

                 S-HHHHHHHHHHHHHHTTC.EEEEEE-GGGHHHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHHHHHHHHHHHHHTT-EB--HHHHHHHCT. CS
       BKACE 182 atpenLlflketadrlpeg.awsvagigraqlplataalalGghvRvGlEDnlylkkgelaksNaelVeravriaeelgrevatpaeaReilgL 274
                 a+  ++    ++ad+lp+g +w+ +gigr+q+p++++a++lGg+vRvGlEDn++l+kg++a sN+ lVera +i+e+lg +  +pae R++++L
  VIMSS61834 202 ADTTTMK---AMADNLPPGaTWAGFGIGRTQMPMVAQAMLLGGNVRVGLEDNIWLDKGVPA-SNGSLVERAIEIIERLGGRALSPAEGRRRMNL 291
                 *****99...59****99967****************************************.****************************9986 PP



Or compare VIMSS61834 to CDD or PaperBLAST