PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS739824 to PF05853 (BKACE)

VIMSS739824 has 351 amino acids

Query:       BKACE  [M=274]
Accession:   PF05853.15
Description: beta-keto acid cleavage enzyme
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-66  208.1   0.0    9.7e-66  207.9   0.0    1.0  1  VIMSS739824  


Domain annotation for each sequence (and alignments):
>> VIMSS739824  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9   0.0   9.7e-66   9.7e-66       1     273 [.      15     318 ..      15     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 9.7e-66
                  SB-EEEE-S-SSS-CCC-TT.S--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHHTTSEEEE-SS..........TTTT CS
        BKACE   1 kviitvavtGavttkednpa.lPvtpeeiaeeaveaaeaGAaivHlHaRdpedgrpsldpelyrevlaairekepdviinlttg..........gast 87 
                  kv+itva++G+ +++ed p+ +Pvt++e++++av++++aGA+++HlH+R+  dgr s+++++++e++a++r++ pd+ii++  +          +a++
  VIMSS739824  15 KVVITVAPYGPEWMPEDFPEdIPVTMAEQVQKAVDCYNAGATVLHLHVRE-LDGRGSKRLSKFNELIAGVRAAVPDMIIQVGGSisfapeddgqAAKW 111
                  89*****************99*****************************.88*****************************9977777777544445 PP

                  G-HHHHHTHHHH.H--..SEEEEE-S-EEEB-.....................SGCEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHT CS
        BKACE  88 msaeerlavlea.lkp..emaslnlgslnfal.....................kdlvfentpedieellrrmaeagvkpeievfdaghlrnvkrliee 161
                   s++ r + +e+  kp   ++++n+ ++n+++                      ++++ + p+++ee+lrr+++ag++p++++  +  l++++rl+++
  VIMSS739824 112 LSDDTRHMLAELdPKPdqVTVAINTTQMNIMEllypeylagtslanpalhaaySEMTVPAGPAWVEEHLRRLQAAGIQPHFQLTGIHALETLERLVRK 209
                  56666777666677883345556666677766888877776666655555444499****************************************** PP

                  TSS-SSEEEEEEE--CTS.--S-HHHHHHHHHHHHHHTTC.EEEEEE-GGGHHHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHHHHHHHHHHHHH CS
        BKACE 162 Gllkgpllvqlvlgvpgg.mpatpenLlflketadrlpeg.awsvagigraqlplataalalGghvRvGlEDnlylkkgelaksNaelVeravriaee 257
                  G ++gpl+++++ g+ gg  +++p n+    + ++r+p+g + ++ ++ +++lp++t+ala+G+h R+G+ED+++ ++ge+  +++ ++e++vr+a+e
  VIMSS739824 210 GTYTGPLNLTWI-GIGGGfDGPNPFNFF---NFIQRVPDGcTLTAESLLKNVLPFNTMALAMGLHPRCGIEDTIIDQHGERM-TSVRQIEQTVRVARE 302
                  *********997.677774678888888...57899999*88*********************************8888888.*************** PP

                  TT-EB--HHHHHHHCT CS
        BKACE 258 lgrevatpaeaReilg 273
                  lgre+a+ ++aR+i+ 
  VIMSS739824 303 LGREIASGKQARDIYR 318
                  *************985 PP



Or compare VIMSS739824 to CDD or PaperBLAST