PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS59490 to PF05957 (DUF883)

VIMSS59490 has 109 amino acids

Query:       DUF883  [M=53]
Accession:   PF05957.17
Description: DUF883 N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-22   64.4   5.5    3.5e-22   64.4   5.5    1.8  2  VIMSS59490  


Domain annotation for each sequence (and alignments):
>> VIMSS59490  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   5.5   3.5e-22   3.5e-22       1      52 [.      12      63 ..      12      64 .. 0.97
   2 ?   -2.1   0.1      0.21      0.21      31      41 ..      68      78 ..      66      80 .. 0.64

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 3.5e-22
      DUF883  1 ekliddlksLladleeLLksaadeageeadeLRerledrLkraRerlsdaqd 52
                ++l +++++L+ad+e LL s+ad ag++a+e+R +++d LkraR++l+d++d
  VIMSS59490 12 DELLAEFQALVADTEKLLQSTADVAGDQAEEIRGKIHDSLKRARDTLRDTKD 63
                799***********************************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.21
      DUF883 31 eLRerledrLk 41
                ++Rer +++++
  VIMSS59490 68 NVRERSQAAVD 78
                67887666655 PP



Or compare VIMSS59490 to CDD or PaperBLAST