PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS258018 to PF05974 (DUF892)

VIMSS258018 has 169 amino acids

Query:       DUF892  [M=159]
Accession:   PF05974.16
Description: Domain of unknown function (DUF892)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-57  178.9   4.2    4.3e-57  178.8   4.2    1.0  1  VIMSS258018  


Domain annotation for each sequence (and alignments):
>> VIMSS258018  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   4.2   4.3e-57   4.3e-57       2     158 ..       4     157 ..       3     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 178.8 bits;  conditional E-value: 4.3e-57
       DUF892   2 leelfideLrDayaaEkqalkalpkmakaaes.peLkaaleqHleeTeqqierleqvferlgeeasekkcdameglvaegqelleeaiedeevkdaal 98 
                  ++e+++d+LrDa+a+E+qa+++l+++a+++e+ p+Lka++eqHleeT +q++ +e ++erlg+++s +k dam +++a+gq++++++ +de+vk+a+ 
  VIMSS258018   4 PQENLMDWLRDAHAMEQQAEQMLKAQAARIEHyPQLKARIEQHLEETLGQQRLVESCIERLGGSPSIIK-DAMGKMAAFGQAMGGMTTSDEIVKGAM- 99 
                  689******************************************************************.***************************. PP

       DUF892  99 iaaaqavehyEiasYgtLialAeqlgeaeaaelLeqtldeEkatdekLtelaeelvnqea 158
                    a++++e++Eia+Y++L+ +A+++g++e+++++eq+l +E+a++++L ++++el+++++
  VIMSS258018 100 --ASYVFENLEIATYTALLGAAKTVGDTETQRVCEQILPQEQAMADWLLAHLPELTEEFL 157
                  ..*****************************************************99875 PP



Or compare VIMSS258018 to CDD or PaperBLAST