PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3383600 to PF06004 (DUF903)

VIMSS3383600 has 76 amino acids

Query:       DUF903  [M=49]
Accession:   PF06004.15
Description: Bacterial protein of unknown function (DUF903)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-29   85.5   1.9    1.1e-28   85.3   1.9    1.1  1  VIMSS3383600  


Domain annotation for each sequence (and alignments):
>> VIMSS3383600  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   1.9   1.1e-28   1.1e-28       1      47 [.      25      71 ..      25      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.1e-28
                  EEEEEETTS-EEEEES--EE-TTTSCEEEEBTTS-EEEEEGGGEEEE CS
        DUF903  1 pYvitTkDGrtivtdgkPklDkdtGmyeYeDeeGkevqInkddVkqi 47
                  +Yv++T+DGrtivtdgkP++D+dtGm++Y+D+ G+++qIn++dVkq 
  VIMSS3383600 25 NYVMHTNDGRTIVTDGKPQTDNDTGMISYKDAWGNKQQINRSDVKQL 71
                  7********************************************97 PP



Or compare VIMSS3383600 to CDD or PaperBLAST