PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2204545 to PF06073 (DUF934)

VIMSS2204545 has 170 amino acids

Query:       DUF934  [M=107]
Accession:   PF06073.15
Description: Bacterial protein of unknown function (DUF934)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-38  115.2   0.0    9.4e-38  114.7   0.0    1.2  1  VIMSS2204545  


Domain annotation for each sequence (and alignments):
>> VIMSS2204545  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   9.4e-38   9.4e-38       1     104 [.      51     155 ..      51     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 9.4e-38
        DUF934   1 gvllasdedveelaadlerlalialefpkFtDGRgySqarlLRerlgykgelrAvGdvlrDqlallkrcGfdafelkedkdaeaaea.alkrfsvaY 96 
                   gvl+++++dv++l+++l rl+++a++fp+F+DGR++S+a+lLR+rlgy++elrAvGdvl+Dq+ l+ r+G+d+f +++ ++++++++ +l +++++Y
  VIMSS2204545  51 GVLIKPADDVRRLEPYLYRLEIVAVAFPAFNDGRAFSHASLLRQRLGYTNELRAVGDVLIDQVPLMLRVGIDSFSVTNATALKRLSEnRLPAIPHHY 147
                   899******************************************************************************999877599******* PP

        DUF934  97 qaavdepq 104
                   q+av++ +
  VIMSS2204545 148 QPAVRDAE 155
                   ***99865 PP



Or compare VIMSS2204545 to CDD or PaperBLAST