PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3798885 to PF06073 (DUF934)

VIMSS3798885 has 174 amino acids

Query:       DUF934  [M=107]
Accession:   PF06073.12
Description: Bacterial protein of unknown function (DUF934)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-32   97.2   0.0      5e-32   96.3   0.0    1.4  2  VIMSS3798885  


Domain annotation for each sequence (and alignments):
>> VIMSS3798885  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.66      0.66      46      57 ..      20      31 ..      17      32 .. 0.79
   2 !   96.3   0.0     5e-32     5e-32       1      98 [.      58     155 ..      58     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.66
        DUF934 46 lgykgelravGd 57
                  + ++ +l a+Gd
  VIMSS3798885 20 YIFADDLEAAGD 31
                  678899999998 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 5e-32
        DUF934   1 gvllasdedveelaedlerlalialefpkFtDGRgySqarlLRerlgykgelravGdvlrDqlallkrcGfdafelredkdleaaek.alkefsvaY 96 
                   gv ++++e+++ l  +l+++alial+fp F+DGR+yS+a++LR r g++gelravGdvl+Dq+ l+ r+Gfd+++++++ +l+++ + +l + + +Y
  VIMSS3798885  58 GVSVSPGEKIDPLLGHLDSIALIALQFPVFNDGRSYSKAEILR-REGFAGELRAVGDVLIDQAVLMLRAGFDTLQVANEVALRRLGEnRLVDTPGYY 153
                   8999***************************************.66**********************************99998765899999999 PP

        DUF934  97 qa 98 
                   q+
  VIMSS3798885 154 QP 155
                   97 PP



Or compare VIMSS3798885 to CDD or PaperBLAST