PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS142416 to PF06074 (DUF935)

VIMSS142416 has 522 amino acids

Query:       DUF935  [M=517]
Accession:   PF06074.16
Description: Protein of unknown function (DUF935)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.3e-186  605.3   0.4   6.5e-186  605.0   0.4    1.0  1  VIMSS142416  


Domain annotation for each sequence (and alignments):
>> VIMSS142416  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  605.0   0.4  6.5e-186  6.5e-186       7     515 ..       7     517 ..       2     519 .. 0.95

  Alignments for each domain:
  == domain 1  score: 605.0 bits;  conditional E-value: 6.5e-186
       DUF935   7 grpikeekaaleeqtaeatltgvrrelsehpssgLtparlarilreaeqGdilaqleLaedmEekdahlaselstRkravlgldwevepasd.daaee 103
                    +i++++aal++++a  ++t++ r+++ehps+ +tp+++++++++ae+Gdi+aq+eL++d+Ee+d+ +a++++tRkra+l+l+w+v+p+++ +++ee
  VIMSS142416   7 KTKIQKPEAALQTDVA--QITATGRVIAEHPSNFITPQKMRALFEDAESGDIRAQHELFADIEERDSDIAANMGTRKRALLTLNWRVAPPRNaTPEEE 102
                  4556666666555555..9******************************************************************************* PP

       DUF935 104 kladavrelledldnledllfdllDAigkGfsvlEieWetsggewvpkalewrdprwfqfdredrnelrlrdateegeelppfkfvvhrhkaksglpi 201
                  kl d+  e++ +l++ledl++dl+DA+g+Gfs+lE+eW +s+g  +p+++ +r+++wf++d+++++ lr+r+++e ge+l+p ++vvh++k++s + +
  VIMSS142416 103 KLSDQAYEMMDSLPTLEDLIMDLMDAVGHGFSALEVEWVFSDGLYLPRNFIHRPQSWFKWDKDNGLLLRTRENPE-GEALWPLGWVVHTQKSRSVQQA 199
                  **************************************************************************9.********************** PP

       DUF935 202 ragllrvlaWpylfknyslkdwaeFlEvYGlPlrlGkYpagAseeeketLlravasigsdAaaiiPesmeiefkeaak..agssdlfealaewcdkqi 297
                  r+gl+r+l+W+y+fk+y+++d+aeFlE YG+P+r+GkY+agA++eek+tLlrava+ig++Aa+i+Pe+meie+++aa+  +++ ++f ++a+wc+k+ 
  VIMSS142416 200 RNGLFRTLSWLYMFKHYAVHDFAEFLELYGMPIRIGKYGAGATKEEKNTLLRAVAEIGHNAAGIMPEGMEIELHNAANgmTSAGNPFLQMADWCEKSA 297
                  *******************************************************************************9999*************** PP

       DUF935 298 SkaiLGqTlTtdadg.gssnAlgkvhneVreDirdaDakqlaatlnrdlirplvalNfgs..qerlPrfefdveepeDlkalaealekLvklGlrvpa 392
                  +++iLGqTlT+ adg +s+nAlg++hne+r+D++++Dakq+a+t+++++i p++++N+     +r+P+fefd++ep+D++ +a+a++kLv++G+++p+
  VIMSS142416 298 ARLILGQTLTSGADGkSSTNALGNIHNEIRRDLLVSDAKQVAQTITSQIIGPFLQINYPHadPNRVPKFEFDTREPKDIAVFADAIPKLVDVGVQIPE 395
                  **********************************************************99989*********************************** PP

       DUF935 393 sevrdklglpepekdeevlkaaaaaepeaaaapaalaaaaalaaqaaaeaaeqdalDaladealaes..qaalepllapvlellqkaesleellarla 488
                  s+vrdkl +p+ +++e+vl  + +++p +   ++alaa +a++  ++a+ ++q+ lD ++d al e   +++l+p++ + +++l++++s+ee+ a+l+
  VIMSS142416 396 SWVRDKLVIPDVQEGEAVLVRQVPDNPVN---RTALAALSAHTVPSKATGRHQEILDGALDDALVEPdfNSQLNPMVRQAVAALNACNSYEEADAALN 490
                  ********************333333333...323445334566889999999******9999999889***************************** PP

       DUF935 489 elypemdaeelaelLaralfvAdllGr 515
                  +lyp++d+++l  ++++alf++d+lG+
  VIMSS142416 491 ALYPNLDNAKLRTYMQQALFISDILGQ 517
                  **************************8 PP



Or compare VIMSS142416 to CDD or PaperBLAST