PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS96439 to PF06074 (DUF935)

VIMSS96439 has 508 amino acids

Query:       DUF935  [M=517]
Accession:   PF06074.16
Description: Protein of unknown function (DUF935)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.9e-171  556.0   0.0   5.8e-171  555.7   0.0    1.0  1  VIMSS96439  


Domain annotation for each sequence (and alignments):
>> VIMSS96439  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.7   0.0  5.8e-171  5.8e-171      27     516 ..       5     503 ..       2     504 .. 0.95

  Alignments for each domain:
  == domain 1  score: 555.7 bits;  conditional E-value: 5.8e-171
      DUF935  27 tgvrrelsehpssgLtparlarilreaeqGdilaqleLaedmEekdahlaselstRkravlgldwevepasd.daaeekladavrelledldnledllf 124
                  ++ +++ ehp+sg+tp+r+a+ lr ae+Gd+ aq +La+d+Eekd+hl++el++R+ a+++++w++ep+ + +a+e+k+a++++e+l+++d+++ +lf
  VIMSS96439   5 PQIASRYIEHPASGITPNRAAQCLRGAERGDLIAQSDLAADIEEKDTHLFAELGKRRLAIQSVPWSIEPPPNaSANEKKDAEMLDEYLHSADWFDAMLF 103
                 57889999******************************************************************************************* PP

      DUF935 125 dllDAigkGfsvlEieWetsggewvpkalewrdprwfqfdredrnelrlrdateegeelppfkfvvhrhkaksglpiragllrvlaWpylfknyslkdw 223
                 d++DAi+kG+s++Eie +  g++++++a++wrd  +f+ +++d  elrlrd++++g + +pf++vvh++++++g+   +gl+r+l+Wp++fknys++d+
  VIMSS96439 104 DATDAILKGYSCMEIEHGMLGKMHIIRAIRWRDSGHFCLNPDDLSELRLRDGSHAGVAFQPFGWVVHQSRSRTGYGGATGLVRTLIWPFIFKNYSVRDL 202
                 *************************************************************************************************** PP

      DUF935 224 aeFlEvYGlPlrlGkYpagAseeeketLlravasigsdAaaiiPesmeiefkeaakagssdlfealaewcdkqiSkaiLGqTlTtdadg.gssnAlgkv 321
                 aeFlEvYGlP+++GkYp+gA+ e+k++L+rav++ig+  ++iiP +m++ef+ aa+ g++d+fe++++w +++iSkaiLG+TlTt+a g +++++lg+v
  VIMSS96439 203 AEFLEVYGLPMKVGKYPSGATSEQKSALMRAVMDIGRRTGGIIPAGMSLEFQVAAN-GQADPFETMISWGERSISKAILGGTLTTEA-GdKGARSLGEV 299
                 ********************************************************.******************************.6699******* PP

      DUF935 322 hneVreDirdaDakqlaatlnrdlirplvalNfgs...qerlPrfefdveepeDlkalaealekLvklGlrvpasevrdklglpepekdeevlkaaaaa 417
                 hneVr++ird+D++qlaatlnrdl++pl+alN+      +rlPr++f+++ep D++++  a+ +L+  G+++p  +vrd+ g+p+p+ +e++ ++ ++ 
  VIMSS96439 300 HNEVRREIRDSDLRQLAATLNRDLVYPLYALNTAHaidIRRLPRICFQTKEPGDITKITSAVMQLST-GMDIPDPWVRDQTGIPQPAPGEAIFRVRQSG 397
                 **********************************99999**************************98.**************************77776 PP

      DUF935 418 epeaaaapaalaaaa.......alaaqaaaeaaeqdalDaladealaes.qaalepllapvlellqkaesleellarlaelypemdaeelaelLaralf 508
                 +++a++ ++   +++        +a   +a+  ++d+lD++ d++ a+  q+a++pll+pv++++ +   l+++la l++ly emd+++l  lL +a+f
  VIMSS96439 398 NEPAQTDKEMPPEKQekteqtaLSARLPEAKSSPRDELDDMGDAVPARRlQDAIDPLLEPVIDAIRT-RGLADALADLPALYREMDDSRLMTLLSDAMF 495
                 6666665533222112333343445577889999***********99989****************9.99***************************** PP

      DUF935 509 vAdllGrl 516
                 +A++ G+l
  VIMSS96439 496 AAEMKGML 503
                 *****986 PP



Or compare VIMSS96439 to CDD or PaperBLAST