PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS122292 to PF06078 (DUF937)

VIMSS122292 has 161 amino acids

Query:       DUF937  [M=135]
Accession:   PF06078.15
Description: Bacterial protein of unknown function (DUF937)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-08   19.2   2.7    3.2e-05   10.6   0.0    2.1  2  VIMSS122292  


Domain annotation for each sequence (and alignments):
>> VIMSS122292  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   1.6   9.9e-05   9.9e-05      36     116 ..      13      99 ..       2     102 .. 0.70
   2 !   10.6   0.0   3.2e-05   3.2e-05       1      55 [.      98     152 ..      98     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 9.9e-05
       DUF937  36 allgalkrna.atpegaagLlsalqsgkhdg.siLdnlgsllggggvaeelleGaaiLghll..Gnkqeevenals...qasGldsgs 116
                  allg l+  + ++ +++ ++++ ++ g++++ +iL +lg+++g+ g a+ l +G + L   +  G++ e++++++s    + G+++++
  VIMSS122292  13 ALLGLLAVAGyQNRDKLGQIFQDAKGGAQNSgGILGELGKMFGDPGEAS-LSKGLGELVDAFknGGNREAADSWVSaekPSQGISAEQ 99 
                  444444444446778999999999986665449**********887776.55677777777778888899999888544455666655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 3.2e-05
       DUF937   1 dlLnsqlgkqlisqiakqlGeseeqvqsavsaalPallgalkrnaatpegaagLl 55 
                  +++ s +gk+ ++++a+++G + ++  + +s+ +P  +  ++ n+  p++ +++l
  VIMSS122292  98 EQVESSIGKDTLQELAAKTGLDYNELLKRLSTSIPDAVDKMTPNGHLPQNDEEVL 152
                  578999******************************9999999999888877765 PP



Or compare VIMSS122292 to CDD or PaperBLAST