PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1160263 to PF06097 (DUF945)

VIMSS1160263 has 502 amino acids

Query:       DUF945  [M=459]
Accession:   PF06097.15
Description: Bacterial protein of unknown function (DUF945)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.6e-158  514.6  18.5   1.8e-158  514.4  18.5    1.0  1  VIMSS1160263  


Domain annotation for each sequence (and alignments):
>> VIMSS1160263  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  514.4  18.5  1.8e-158  1.8e-158       1     459 []       1     480 [.       1     480 [. 0.99

  Alignments for each domain:
  == domain 1  score: 514.4 bits;  conditional E-value: 1.8e-158
        DUF945   1 MKKslvavgvvvalgaawtGaswytGkqaeqrldalvaqlneqlakalpeegl.....sYerGfFsStatyvlq.aqgpdndeegqpvslvldstid 91 
                   M+Kslvavgv+valg++wtG++wytGk++e +l+++vaq+n+ql++++pe++l     +Y+rG+FsS+ ++ ++   g++n + + ++s+ +++ +d
  VIMSS1160263   1 MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLevsyqNYHRGVFSSQLQLLVKpIAGKENPWIKSGQSVIFNESVD 97 
                   9**************************************************************************889******************* PP

        DUF945  92 HGPlplsr..kfnlipalAsvhtelendeatkklfekakgksPltidtrvgysGstsselslpafdyeedgeklnfsGldlkvdlskdlkkvklegd 186
                   HGP+pl++  k+nlip++As++t+l+n+e  k+lf++akg++P++i++r+gysG++ss++sl++++ye+++ek++fsG+++++++++d k ++l+g+
  VIMSS1160263  98 HGPFPLAQlkKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGE 194
                   ************************************************************************************************* PP

        DUF945 187 lpglqveaan....keslelkgltldsdlkrgkeglylGdsslkidslsvssegkegvelkglsld..sdstedgdflnsqlkysldslkvngkdlg 277
                   +++  ++a n    k++l++++l+ d++++ +++g ++G+++l+++++++s+egke + l+g++++  sd  +dg+++nsql+ysl+slkv+++dlg
  VIMSS1160263 195 AQSGRIDAVNeynqKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISgkSDLVNDGKTINSQLDYSLNSLKVQNQDLG 291
                   ******************************************************************999999************************* PP

        DUF945 278 slqlklslnnLDaaalqalseayqqlqakalaa....kdpeelqealeealkaalpkLLkknPeleidplslknpkGestlnlsldl......edsa 364
                   s++l+l++ ++D++a++++s++y+++++  la+    ++pe +qe+++ea+++alp +Lk++P+++i+pls+kn++Ges lnlsl l      ++++
  VIMSS1160263 292 SGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQpeiaNNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLkdpattKEAP 388
                   ***************************************************************************************9999999999 PP

        DUF945 365 kddaenlaqllkkleldaklslpkamleelltqaaasqegadaedaekqakqqveellqmlqmqglltlegdaiksslqyadGqvtlNGkkmple 459
                   ++ a+ +++++k+  ldakl++p +m++e++tq+ a++eg+++++a+k+akqqve+ ++m+qm++l+tl++++i++slqy +Gq+tlNG+kmple
  VIMSS1160263 389 QTLAQEVDRSVKS--LDAKLTIPVDMATEFMTQV-AKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYTNGQITLNGQKMPLE 480
                   9999*********..*******************.9*********************************************************85 PP



Or compare VIMSS1160263 to CDD or PaperBLAST