PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9HDU8 to PF06198 (DUF999)

SwissProt::Q9HDU8 has 250 amino acids

Query:       DUF999  [M=143]
Accession:   PF06198.15
Description: Protein of unknown function (DUF999)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.4e-81  257.8   6.4    2.1e-81  257.2   6.4    1.3  1  SwissProt::Q9HDU8  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9HDU8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.2   6.4   2.1e-81   2.1e-81       1     143 []      21     159 ..      21     159 .. 0.99

  Alignments for each domain:
  == domain 1  score: 257.2 bits;  conditional E-value: 2.1e-81
             DUF999   1 mvedvcnvdleqgldlckpekvnkqsqrsrqsrqslftniikpqkdklniktnkikeflndlftefskfhnsyypdgristrsklrwvllii 92 
                        mv+d++nvdle+gl+lckpekvnk         q+lftniikpqkdk+nikt+kik+fln+lftefskfh+s+ypdgristrsklrw+llii
  SwissProt::Q9HDU8  21 MVRDTRNVDLERGLELCKPEKVNK---------QNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLLII 103
                        9***********************.........9********************************************************** PP

             DUF999  93 wsiiivlaidkkfevkeflsiw.....inenrfyseiwgpiaiyvcllvllllali 143
                        w+i+iv+aidk+fevk+flsiw     inenrfyseiwgpiaiy+cl++llll+li
  SwissProt::Q9HDU8 104 WCILIVFAIDKNFEVKDFLSIWinesfINENRFYSEIWGPIAIYICLFILLLLGLI 159
                        **********************9999999************************986 PP



Or compare SwissProt::Q9HDU8 to CDD or PaperBLAST