PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS132485 to PF06299 (DUF1045)

VIMSS132485 has 265 amino acids

Query:       DUF1045  [M=159]
Accession:   PF06299.16
Description: Protein of unknown function (DUF1045)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-58  183.9   0.2    1.4e-58  183.5   0.2    1.1  1  VIMSS132485  


Domain annotation for each sequence (and alignments):
>> VIMSS132485  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   0.2   1.4e-58   1.4e-58       2     158 ..      62     218 ..      61     219 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 1.4e-58
      DUF1045   2 LkaPfrlaegvteaeLlaalaalaaelapfelpglevarlggflALvpaapsealqalAaacvraldefRaplseaelarrrperLterqralLerWG 99 
                  + aPfrl+++++ea+Ll+a++ +++  +pf++++levarl+++++L+p+ ps++++ lAa++++ald+fRaplse++++r +p+rLt+ q ++L+rWG
  VIMSS132485  62 IMAPFRLRPDMDEAQLLKAMMLFTSGETPFQIERLEVARLSQCWGLMPEVPSQSMHLLAARVLQALDRFRAPLSEDDIERADPDRLTAPQFTNLHRWG 159
                  67************************************************************************************************ PP

      DUF1045 100 yPyVleeFrFhmtLtgrldeeeraaleaalealfapllaeplavdelalfveeepgapF 158
                  +P+V++e+rFhm Ltg+l+ +  +++ea l+ lf+pll+epl + +lalf+e+epgap+
  VIMSS132485 160 DPHVMDEYRFHMPLTGPLNVDVGRRVEAPLRGLFEPLLSEPLLIGSLALFIEHEPGAPM 218
                  *********************************************************98 PP



Or compare VIMSS132485 to CDD or PaperBLAST