PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS14455 to PF06496 (DUF1097)

VIMSS14455 has 165 amino acids

Query:       DUF1097  [M=142]
Accession:   PF06496.15
Description: Protein of unknown function (DUF1097)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-31   94.7  29.4    3.3e-31   94.6  29.4    1.0  1  VIMSS14455  


Domain annotation for each sequence (and alignments):
>> VIMSS14455  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6  29.4   3.3e-31   3.3e-31       2     141 ..       9     152 ..       8     153 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 3.3e-31
     DUF1097   2 lsvgvlaalwallaatlg.....elpvWagFigwasffaaGgglkgllksllsnllGvvwallaillisllgpnlgllall....vvgivaflmvllak 91 
                 ++vg++a+lw l+++++g     el++ +gF++ +sf+aaGgg++g+++sl+ n++G+vwa++a+l++++l++ +gl a++    +++ +++++v++ +
  VIMSS14455   9 VTVGICAGLWQLVSSHVGlsqgwELLGTIGFVAFCSFYAAGGGKSGFIRSLAVNYSGMVWAFFAALTAGWLASVSGLSAFWasviTTVPFSAVVVWQGR 107
                 79***************999999**********************************************************9999999*********** PP

     DUF1097  92 ipllsfiPaaflGlastfatllatlsgpllavavslalGavfGyasella 141
                 ++llsfiP+ flG++ +fa      ++++ ++++ +++G+++G++se+++
  VIMSS14455 108 FWLLSFIPGGFLGMTLFFA-----SGMNWTVTLLGFLAGNCVGVISEYGG 152
                 *******************.....7899*******************987 PP



Or compare VIMSS14455 to CDD or PaperBLAST