PaperBLAST – Find papers about a protein or its homologs

 

Align NP_571004.1 to PF06565 (DM10_dom)

NP_571004.1 has 374 amino acids

Query:       DM10_dom  [M=105]
Accession:   PF06565.16
Description: DM10 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-09   24.0   0.1    3.2e-09   22.9   0.1    1.6  1  NP_571004.1  


Domain annotation for each sequence (and alignments):
>> NP_571004.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.2e-09   3.2e-09      13     101 ..       6      76 ..       2      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.2e-09
     DM10_dom  13 rFkayldeksespeeeerkfvisyyleDdtieifEpkqrNsGivggkflkRqklpkpgseekeeyytpkdlnvgatvnvfgrkflllda 101
                   F a + ++   +    r++ + yy +D+++e+f  k+      + +fl+R+kl++         ++p+dl vg++vn+f+r++ l++ 
  NP_571004.1   6 AFLAEWYDP---SAALLRRYQLLYYPKDGSVEMFDMKN------QRTFLRRTKLEE---------LQPEDLFVGNRVNIFSRQLNLISY 76 
                  577777775...678899****************9875......468*******76.........79****************999875 PP



Or compare NP_571004.1 to CDD or PaperBLAST